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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGAGGTTCAGTCAAGTTGAAAAGGATTATGCAGACAATTCTTTCTCTCGGAAATGCATTGAACCAAGGCACTGCTAGAGgtaagcaaaattgtgaattgatacttcttaag

Basic information

species Zea mays
transcript AC197714.3_FGT005
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC197714.3_FGT005 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g17820.1 (Oryza sativa), 5'ss of exon 10
ATACGAGGTTCAGTCAAGTTGAAAAGGATTATGCAGACAATTCTTTCTCTCGGAAATGCATTGAACCAAGGCACTGCTAGAGgtaagcaaaattgt-gaattgatacttcttaag-------------------------------------------------------------------
||| | |||||||  ||| |||||||||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||||  |||||||| ||| |  || || |  |                                                                    
ATAAGGGGTTCAGCTAAGCTGAAAAGGATTATGCAGACAATTCTTTCACTGGGAAATGCGTTAAACCAAGGAACTGCTAGAGgtaatgaaaattgtagaagtattagttgtccaagagaatatttggtgagcaaccaagtgctattcttatttttttcataaagactatttgaaaatcttgt

upper sequence: AC197714.3_FGT005 (Zea mays), 5'ss of exon 6
lower sequence: EFJ37653 (Selaginella moellendorffii), 5'ss of exon 11
ATACGAGGTTCAGTCAAGTTGAAAAGGATTATGCAGACAATTCTTTCTCTCGGAAATGCATTGAACCAAGGCACTGCTAGAGgtaagcaaaat---tgtgaattgatacttcttaag--------------------
 |   ||  ||    ||| | |||||  | ||||| ||  |||| || || |||||||| || |||||||| ||||||||||||||||| | |    | ||  |    ||   |||                     
GTGAAAGAGTCTCCTAAGCTTAAAAGAGTGATGCAAACGGTTCTGTCCCTGGGAAATGCGTTAAACCAAGGAACTGCTAGAGgtaagcagagtgcccgggagcttgagctaagtaacaagtgtggctgttgttccag