1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTATCAGATCTTCTTGACTTCATAAGCCCAGTCCAGGAAAGAAAAGAAAGCAATGTGCAAAGGAAGTGTCGGCGTGCAAAGgtgattataacacatgttttcttttctttctttttgtcttgaacaatgcaggtgagctgtgtatctttgtattaaagatagatgaagaaccaatccctta...
species | Zea mays |
transcript | GRMZM5G892758_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCAGGAAAGAAAAGAAAGCAATGTGCCCTGGAAGTGTCGGCGTGCAAAG AATAATACCAGAGCTCATCATGGTGAATCAGTTGAAGAAAAGGAGAATTTCEST: gi|67028886|gb|CO457635.1|CO457635
genomic: TCCAGGAAAGAAAAGAAAGCAATGTGCAAAGGAAGTGTCGGCGTGCAAAGgtgattataa ... ttaattgcagAATAATACCAGAGCTCATCATGGTGAATCAGTTGAAGAAAAGGAGAATTTC
EST: TCCAGGAAAGAAAAGAAAGCAATGTGCAAAGGATGTGCCGGCGTGCAAAG AATAATACCAGAGCTCATCATGGTGAATCAGTTGAAGAAAAGGAGAATTTCEST: gi|211396983|gb|FL123370.1|FL123370
genomic: TCCAGGAAAGAAAAGAAAGCAATGTGCAAAGGAAGTGTCGGCGTGCAAAGgtgattataa ... ttaattgcagAATAATACCAGAGCTCATCATGGTGAATCAGTTGAAGAAAAGGAGAATTTC
EST: TCCAGGAAAGAAAAGAAAGCAATGTGCAAAGGAAGTGTCGGCGTGCAAAG AATAATACCAGAGCTCATCATGGTGAATCAGTTGAAGAAAAGGAGAATTTC
genomic: TCCAGGAAAGAAAAGAAAGCAATGTGCAAAGGAAGTGTCGGCGTGCAAAGgtgattataa ... ttaattgcagAATAATACCAGAGCTCATCATGGTGAATCAGTTGAAGAAAAGGAGAATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTATCAGATCTTCTTGACTTCATAAGCCCAGTCCAGGAAAGAAAAGAAAGCAATGTGCAAAGGAAGTGTCGGCGTGCAAAGgtgattataacacatgttttcttttctttctttttgtcttgaacaatgcaggtgagctgtgtatctttgtattaaagatagatgaagaaccaatccctta
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaagaa