1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTATTTACTGGAGGTCTAGTATTAGCAGTTCCAGGATCTGCCGTTGCTTGTTATGCTTGCGGATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCGgtatgtggtttgaagcactgtggttgttatattgggatttttcttcccctgcatatttgtaatcagaggcaattttctttacatcatgcagccttttctc...
species | Zea mays |
transcript | GRMZM5G892035_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTATGCTTGCGGATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCG GAAGCACCCTGTGGCGATTTGACGACACACTTATTCTGTCACTTGTGTGCTEST: gi|116826785|gb|EC870620.1|EC870620
genomic: GTTATGCTTGCGGATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCGgtatgtggtt ... acctatgcagGAAGCACCCTGTGGCGATTTGACGACACACTTATTCTGTCACTTGTGTGCT
EST: GTTATGCTTGCGGATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCG GAAGCACCCTGTGGCGATTTGACGACACACTTATTCTGTCACTTGTGTGCTEST: gi|71765695|gb|DR963632.1|DR963632
genomic: GTTATGCTTGCGGATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCGgtatgtggtt ... acctatgcagGAAGCACCCTGTGGCGATTTGACGACACACTTATTCTGTCACTTGTGTGCT
EST: GTTATGCTTGCGGATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCG GAAGCACCCTGTGGCGATTTGACGACACACTTATTCTGTCACTTGTGTGCTEST: gi|211110941|gb|FL028257.1|FL028257
genomic: GTTATGCTTGCGGATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCGgtatgtggtt ... acctatgcagGAAGCACCCTGTGGCGATTTGACGACACACTTATTCTGTCACTTGTGTGCT
EST: ATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCG GAAGCA-CCTGTGGCGATTTGACGACACACTTATTCTGTCACTTGTGTGCTEST: gi|211409317|gb|FL444002.1|FL444002
genomic: ATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCGgtatgtggtt ... acctatgcagGAAGCACCCTGTGGCGATTTGACGACACACTTATTCTGTCACTTGTGTGCT
EST: ATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCG GAAGCACCCTGTGGCGATTTGACGACACACTTATTCTGTCACTTGTGTGCT
genomic: ATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCGgtatgtggtt ... acctatgcagGAAGCACCCTGTGGCGATTTGACGACACACTTATTCTGTCACTTGTGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTATTTACTGGAGGTCTAGTATTAGCAGTTCCAGGATCTGCCGTTGCTTGTTATGCTTGCGGATATCGCAGTGCACTAAGAACAAAGTACAATCTTCCGgtatgtggtttgaagcactgtggttgttatattgggatttttcttcccctgcatatttgtaatcagaggcaattttctttacatcatgcagccttttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctgc