1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTTCATTGAGTGGGCCTCATTCCATTCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgcttgtattaccattgcaattatattgtagctctttaaaaattgaagatctctcccccattatgccttatatattcatcattaatttagatg...
species | Zea mays |
transcript | GRMZM5G891739_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTCAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATEST: gi|4804563|gb|AI665586.2|AI665586
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGAT
EST: ACTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTCAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATEST: gi|10697633|gb|BE997357.1|BE997357
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGAT
EST: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATEST: gi|67039156|gb|CO465411.1|CO465411
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGAT
EST: ACTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTCAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATEST: gi|211127614|gb|FL312983.1|FL312983
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGAT
EST: ACTKGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTCAGTAAGTCAACAGGAAACGCAEST: gi|211400090|gb|FL367035.1|FL367035
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGGAAACGCA
EST: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTGAGTAAGTCAACAGGEST: gi|211279556|gb|FL330408.1|FL330408
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGG
EST: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTEST: gi|211437458|gb|FL316488.1|FL316488
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATT
EST: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGEST: gi|78027318|gb|DV495705.1|DV495705
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTG
EST: ACTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTCAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATEST: gi|211462831|gb|FL343053.1|FL343053
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGAT
EST: ACTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTEST: gi|47962526|gb|CN845235.1|CN845235
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACT
EST: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGATEST: gi|45568100|gb|CK985902.1|CK985902
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGAT
EST: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGG GTGGCCATGAACTCAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGAT
genomic: TCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgc ... tattttgaagGTGGCCATGAACTGAGTAAGTCAACAGGAAACGCAGGAGCTAGAATTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCATTGAGTGGGCCTCATTCCATTCTGGGAAGGGCAGTTGTTGTACATGCTGATCCTGATGACCTAGGGAGGGgtaagcatgcttgtattaccattgcaattatattgtagctctttaaaaattgaagatctctcccccattatgccttatatattcatcattaatttagatg
- - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc