1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTCAGTTTGCGACGTTGAACGTGAGAATACCATCGTGGACATCTTTGAATGGCGCAAAGGCAACACTGAATGGCAAGCATCTGGAATTAGCATCTCCAGgtatgcccatcagcacagcagaaacagaaagaaacgaatataatgggaacaatttgttctcacacagactttggttaatgccag
species | Zea mays |
transcript | GRMZM5G885766_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGCGCAAAGGCAACACTGAATGGCAAGCATCTGGAATTAGCATCTCCAG GGACATTTCTCACTATCAGCAAGCAGTGGGGCAGCGGTGATCAGTTGTCACEST: gi|89252904|gb|DY624690.1|DY624690
genomic: TGGCGCAAAGGCAACACTGAATGGCAAGCATCTGGAATTAGCATCTCCAGgtatgcccat ... ttaatgccagGGACATTTCTCACTATCAGCAAGCAGTGGGGCAGCGGTGATCAGTTGTCAC
EST: TGGCGCAAAGGCAACACTGAATGGCAAGCATCTGGAATTAGCATCTCCAG GGACATTTCTCACTATCAGCAAGCAGTGGGGCAGCGGTGATCAGTTGTCACEST: gi|149089639|gb|EE178893.2|EE178893
genomic: TGGCGCAAAGGCAACACTGAATGGCAAGCATCTGGAATTAGCATCTCCAGgtatgcccat ... ttaatgccagGGACATTTCTCACTATCAGCAAGCAGTGGGGCAGCGGTGATCAGTTGTCAC
EST: TGGCGCAAAGGCAACACTGAATGGCAAGCATCTGGAATTAGCATCTCCAG GGACATTTCTCACTATCAGCAAGCAGTGGGGCAGCGGTGATCAGTTGTCACEST: gi|93284510|gb|EB676774.1|EB676774
genomic: TGGCGCAAAGGCAACACTGAATGGCAAGCATCTGGAATTAGCATCTCCAGgtatgcccat ... ttaatgccagGGACATTTCTCACTATCAGCAAGCAGTGGGGCAGCGGTGATCAGTTGTCAC
EST: TGGCGCAAAGGCAACACTGAATGGCAAGCATCTGGAATTAGCATCTCCAG GGACATTTCTCACTATCAGCAAGCA
genomic: TGGCGCAAAGGCAACACTGAATGGCAAGCATCTGGAATTAGCATCTCCAGgtatgcccat ... ttaatgccagGGACATTTCTCACTATCAGCAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCAGTTTGCGACGTTGAACGTGAGAATACCATCGTGGACATCTTTGAATGGCGCAAAGGCAACACTGAATGGCAAGCATCTGGAATTAGCATCTCCAGgtatgcccatcagcacagcagaaacagaaagaaacgaatataatgggaacaatttgttctcacacagactttggttaatgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG