1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACTAAAACGGTCTGATAAGTTTGCAGCTGATGCTTTGGTGAATTTCAAGAACACCAGGCATGTCGTTCTGTACTATGAGGATGTTGTCAGGAGTCGGACGgtgagttgctgttgcttcatgtcggtctgttgaggctaaatcaaacttccattttcctgaacaatgtgttgtttctgtcttcag
species | Zea mays |
transcript | GRMZM5G877077_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTATGAGGATGTTGTCAGGAGTCGGACG ATGCTCATGGATGTCCTGGATTTTCTAAGACTGCCTAAGAGGAAGCTGTTGEST: gi|211272705|gb|FL458991.1|FL458991
genomic: CTATGAGGATGTTGTCAGGAGTCGGACGgtgagttgct ... ctgtcttcagATGCTCATGGATGTCCTGGATTTTCTAAGACTGCCTAAGAGGAAGCTGTTG
EST: ACACCAGGCATGTCGTTCTGTACTATGAGGATGTTGTCAGGAGTCGGACG ATGCTCATGGATGTCCTGGATTTTCTAAGACTGCCTAAGAGGAAGCTGTTGEST: gi|5714176|gb|AI944161.1|AI944161
genomic: ACACCAGGCATGTCGTTCTGTACTATGAGGATGTTGTCAGGAGTCGGACGgtgagttgct ... ctgtcttcagATGCTCATGGATGTCCTGGATTTTCTAAGACTGCCTAAGAGGAAGCTGTTG
EST: ACACCAGGCATGTCGTTCTGTACTATGAGGATGTTGTCAGGAGTCGGACG ATGCTCATGGATGTCCTGGATTTTCTAAGACTGCCTAAGAGGAAGCTGTTG
genomic: ACACCAGGCATGTCGTTCTGTACTATGAGGATGTTGTCAGGAGTCGGACGgtgagttgct ... ctgtcttcagATGCTCATGGATGTCCTGGATTTTCTAAGACTGCCTAAGAGGAAGCTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTAAAACGGTCTGATAAGTTTGCAGCTGATGCTTTGGTGAATTTCAAGAACACCAGGCATGTCGTTCTGTACTATGAGGATGTTGTCAGGAGTCGGACGgtgagttgctgttgcttcatgtcggtctgttgaggctaaatcaaacttccattttcctgaacaatgtgttgtttctgtcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG