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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatttcatccgtgtcctttggagtttttgttgcttccttctgaaggccattttctgttgttcaataatgcactcgttttcagaaatactaaagg...

Basic information

species Zea mays
transcript GRMZM5G872417_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872417_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g51650.1 (Oryza sativa), 5'ss of exon 5
GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatttcatccgt-gtcctttggagtttttgttgctt--------ccttc-tgaaggccattttctgttgttcaataatgcactcgttttcagaaatactaaagg----------------------------
|||||||| ||||| |||||||||||  ||||||| || ||||| ||||||||||||| |||||| ||  | ||| ||||   | ||| ||||||        ||| | || ||| | |||   | |||   ||  ||   | ||  |  |    ||| |||                             
GAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATgtaagctatttcctcaattgtcgtttgagctgtttattgcttattaattacctgcatggaggtcgtttatggatgtgttattttgt-ttggtggtgtgcctaactgaagttgaatccgtgggtgatgcatatttacag

upper sequence: GRMZM5G872417_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G18410.1 (Glycine max), 5'ss of exon 5
GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatttca-tccgtgtcc---tttggagtttttgt-tgcttccttctg-aaggccattttctgttgttcaataatgcactcgttttcagaaat-actaaagg
|| || || |||||||||||||||||| ||||||| |||||||||||||| ||||| |     | | ||| | |     ||||    |  | | |  ||| |   |  |  | ||||        | ||  ||| |    ||  |     | | |  || 
GAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATgtatgcccccttactccatttttcaatttgtgtatcatatatatttcatatcgtgacactatttatatacactaaaacatgtatggtttccctttggtcattgcag-

upper sequence: GRMZM5G872417_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA15G40590.1 (Glycine max), 5'ss of exon 5
GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatttcatccgtgtcctttggagtttt----tgtt---gcttccttctgaaggccattttctgt-tgttcaataatgcactcgttttcag--aaatactaaagg
|| || || |||||||||||||||||| | ||||| |||||||||||||||||||| |    ||  ||  |    |||  | || |      ||     ||| || ||  |  |  ||| | |    | || |||| | | |||| |        | |  || 
GAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATgtatgtcccttactctatcatttttaaatttgtgcatcatttagatttcattttgtggcactatttatatacactaaaaaatgta-tggtttccgtttggtcattgcag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352709|gb|DN219682.1|DN219682
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|71309944|gb|DR791257.1|DR791257
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|78545121|gb|DV622619.1|DV622619
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|60346643|gb|DN213616.1|DN213616
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCACGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|60338206|gb|DN205179.1|DN205179
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|211108839|gb|FL459273.1|FL459273
EST:     GGAKTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTYSATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|71309946|gb|DR791258.1|DR791258
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|93011979|gb|EB637499.1|EB637499
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|211478436|gb|FL475434.1|FL475434
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|211119264|gb|FL172295.1|FL172295
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|31405969|gb|CD484701.1|CD484701
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTAGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|211118481|gb|FL172294.1|FL172294
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGANGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|88757353|gb|DY541494.1|DY541494
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|26456923|gb|CA828506.1|CA828506
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|60348947|gb|DN215920.1|DN215920
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|9254766|gb|BE345234.1|BE345234
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|26456102|gb|CA827685.1|CA827685
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|20811135|gb|BQ295613.1|BQ295613
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|33099527|gb|CF059487.1|CF059487
EST:     ACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: ACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|78544371|gb|DV621869.1|DV621869
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|33093312|gb|CF053306.1|CF053306
EST:     ACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: ACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|211119265|gb|FL172296.1|FL172296
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|211119266|gb|FL172297.1|FL172297
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|32844250|gb|CD983931.1|CD983931
EST:     ACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: ACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|19770275|gb|BQ034996.1|BQ034996
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|31557971|gb|CD527183.1|CD527183
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|5343084|gb|AI795494.1|AI795494
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|21626250|gb|BQ621171.1|BQ621171
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|23199819|gb|BU582384.1|BU582384
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|32928410|gb|CF033222.1|CF033222
EST:     TACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: TACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|78544396|gb|DV621894.1|DV621894
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|17930348|gb|BM267308.1|BM267308
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|45567457|gb|CK985581.1|CK985581
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|37378013|gb|CF625658.1|CF625658
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|19770274|gb|BQ034995.1|BQ034995
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|60358027|gb|DN225000.1|DN225000
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTC
EST: gi|166656936|gb|EG128875.1|EG128875
EST:     GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT                         AAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATA
genomic: GGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 369

GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTCGAAGCTAAGGGCGCACCCACTGAAGCCTGTTATTCACTGAGGTCCGAGT


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 162

GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTCGAAGCTAAGGGCGCACCCACTGAAGCCTGTTATTCACTGAGGTCCGAGT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 168

GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTCGAAGCTAAGGGCGCACCCACTGAAGCCTGTTATTCACTGAGGTCCGAGT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 125

GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatt ... aaatatttagAAGCGTTGTGGGCGAGGTTGATGAAGAGCTGGATTCAAGATTGGATATGTCGAAGCTAAGGGCGCACCCACTGAAGCCTGTTATTCACTGAGGTCCGAGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACATgtaagatatttcatccgtgtcctttggagtttttgttgcttccttctgaaggccattttctgttgttcaataatgcactcgttttcagaaatactaaagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagaaata