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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGTCTACTGGACTAGGCAGGATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggcttatctgaatgtcaccttattgtgtactattgataaaggtgatccaatgtttagagatcctagtggttggggatcaaatcagggtaacagatg...

Basic information

species Zea mays
transcript GRMZM5G872373_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872373_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g41670.1 (Oryza sativa), 5'ss of exon 5
GTGCTGTCTACTGGACTAGGCAGGATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggcttatctgaatgtcaccttattgtg---tactattgataaaggtgatccaatgtttagagatcctagtggttggggatcaaatcagggtaacagatg
 |  |||| || || || ||||| || ||||| ||||||||||| |||||||||||||||||||| || || |||||| || |||||| ||  || |||||| |   |  ||  |   |   |||    |||| |  ||||  |  |  |||        |||| |      ||  
ATCTTGTCCACCGGGCTTGGCAGAATCGTTCCAAATTTGATATCCAGGAAGCACACTAACAGCGCAGCAACTGgtatgactgatctgattgctacattattgcgccgtgataaagcctagtatgaagtgatgtgtt-agatttttcta-ttgaattatgtatcacgagcctggaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71427885|gb|DR808935.1|DR808935
EST:     GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG                         TCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
genomic: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggctta ... tgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
EST: gi|148954539|gb|EC899976.2|EC899976
EST:     GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG                         TCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
genomic: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggctta ... tgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
EST: gi|8368636|gb|BE051581.1|BE051581
EST:     GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG                         TCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
genomic: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggctta ... tgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
EST: gi|74234157|gb|DT642071.1|DT642071
EST:     GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG                         TCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
genomic: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggctta ... tgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
EST: gi|91867347|gb|EB399652.1|EB399652
EST:     GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG                         TCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG
genomic: GATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGgtatggctta ... tgtgcttcagTCCTCTATGCATTTTTTGGGCTACGGCTCCTGTACATCGCTTGGAGGTCAG