1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTGATGTAATCATTTGTGGAAAGAAAAGGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTGgtacatattctttgtgctttgttgcatctgtactaagaaatggcatgatttccttgtagcttcttgtgcctgagcattctgatgtggtgttgtgatacag
species | Zea mays |
transcript | GRMZM5G868168_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTG GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTEST: gi|19057652|gb|BM736319.1|BM736319
genomic: GGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTGgtacatattc ... tgtgatacagGTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTT
EST: GGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTG GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAACGTTEST: gi|211065957|gb|FK946602.1|FK946602
genomic: GGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTGgtacatattc ... tgtgatacagGTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTT
EST: GGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTG GTCTTTTCAAAGTGCTGCACTTTTTTGATTCTCTCACAGTTCGTGAAAATGEST: gi|19436793|gb|BM953203.1|BM953203
genomic: GGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTGgtacatattc ... tgtgatacagGTCTTT-CAAAGTGCTGCACTTTTT-GATTCTCTCACAGTTCGTGAAAATG
EST: GGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATGGGTTTG GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAACGTTEST: gi|31356046|gb|CD440403.1|CD440403
genomic: GGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTGgtacatattc ... tgtgatacagGTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTT
EST: GGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTG GTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAACGTT
genomic: GGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTGgtacatattc ... tgtgatacagGTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGATGTAATCATTTGTGGAAAGAAAAGGCATGGTTTAGTTAGCGATGAGGATATAGAGGGTCTCCGCATTGGTTTGgtacatattctttgtgctttgttgcatctgtactaagaaatggcatgatttccttgtagcttcttgtgcctgagcattctgatgtggtgttgtgatacag
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT