1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGCTAAACGACACCGCAAAACCACATGCACCGAGTACACTATATCAATGGATTCTGGCAACATCTCAAGATCAAAAAGAACCTACATTGGAAAAATAAGgtaaaccgtatgtttttgaaagatatcttcttgttttccctttttctgtgtgtgggtgggtgggggagggggggggtctgttcgacagtttaacaagtatagccttgccaatttgcag
species | Zea mays |
transcript | GRMZM5G866954_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAAAAATAAG GTCTAACTTCCTAGGCACAAGATTTTTAATTTATGATACACAAGCC-CCCTEST: gi|18660975|gb|BM501146.1|BM501146
genomic: TGGAAAAATAAGgtaaaccgta ... caatttgcagGTCTAACTTCCTTGGCACAAGATTTTTAATTTATGATACACAA-CCGCCCT
EST: GGCAACATCTCAAGATCAAAAAGAACCTACATTGGAAAAATAAG GTCTAACTTCCTTGGCACAAGATTTTTAATTTATGATACACAACCGCCCTAEST: gi|211384506|gb|FL034444.1|FL034444
genomic: GGCAACATCTCAAGATCAAAAAGAACCTACATTGGAAAAATAAGgtaaaccgta ... caatttgcagGTCTAACTTCCTTGGCACAAGATTTTTAATTTATGATACACAACCGCCCTA
EST: TGGAAAAATAAG GTCTAACTTCCTAGGCACAAGATTTTTAATTTATGATACACAAGCC-CCCTEST: gi|211384501|gb|FL034439.1|FL034439
genomic: TGGAAAAATAAGgtaaaccgta ... caatttgcagGTCTAACTTCCTTGGCACAAGATTTTTAATTTATGATACACAA-CCGCCCT
EST: TGGAAAAATAAG GTCTAACTTCCTAGGCACAAGATTTTTAATTTATGATACACAAGCC-CCCT
genomic: TGGAAAAATAAGgtaaaccgta ... caatttgcagGTCTAACTTCCTTGGCACAAGATTTTTAATTTATGATACACAA-CCGCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTAAACGACACCGCAAAACCACATGCACCGAGTACACTATATCAATGGATTCTGGCAACATCTCAAGATCAAAAAGAACCTACATTGGAAAAATAAGgtaaaccgtatgtttttgaaagatatcttcttgttttccctttttctgtgtgtgggtgggtgggggagggggggggtctgttcgacagtttaacaagtatagccttgccaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC