1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
ATATACAATTATCAACGAAGTTGGTGATGGAACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGGTGAAGTGgtatgtcattaggcttgcccatttgttgcttgtgttacaccttaacttttttcaatagttacacagttcagttacccattgttagccttttcaccttattaagatacctgggctgatag
species | Zea mays |
transcript | GRMZM5G864414_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGGTGAAGTG GTTGCGATCAAGAAGATGAAGAAAAAGTATTATTCTTGGGAAGAGTGCATAEST: gi|31350095|gb|CD434452.1|CD434452
genomic: GAACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGGTGAAGTGgtatgtcatt ... gggctgatagGTTGCGATCAAGAAGATGAAGAAAAAGTATTATTCTTGGGAAGAGTGCATA
EST: AACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGGCT-AAGTG GTTGCGATCAAGAAGATGAAGAAAAAGTATTATTCTTGGGAAGAGTGCATEST: gi|31353144|gb|CD437501.1|CD437501
genomic: AACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGG-TGAAGTGgtatgtcatt ... gggctgatagGTTGCGATCAAGAAGATGAAGAAAAAGTATTATTCTTGGGAAGAGTGCAT
EST: GAACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGGCGAAGTG GTTGCGATCAAGAAGATGAAGAAAAAGTATTATTCTTGGGAAGAGTGCATAEST: gi|211272897|gb|FL354598.1|FL354598
genomic: GAACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGGTGAAGTGgtatgtcatt ... gggctgatagGTTGCGATCAAGAAGATGAAGAAAAAGTATTATTCTTGGGAAGAGTGCATA
EST: GAACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGGCGAAGTG GTTGCGATTAAGAAGATGAAGAAAAAGTATTATTCTTGGGAAGAGTGCATA
genomic: GAACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGGTGAAGTGgtatgtcatt ... gggctgatagGTTGCGATCAAGAAGATGAAGAAAAAGTATTATTCTTGGGAAGAGTGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATACAATTATCAACGAAGTTGGTGATGGAACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGGTGAAGTGgtatgtcattaggcttgcccatttgttgcttgtgttacaccttaacttttttcaatagttacacagttcagttacccattgttagccttttcaccttattaagatacctgggctgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA