1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCCAATTCACAGAAAGGTTGGCCGTTTTTTCAGCGGTTGCTTGTTGCTCTTTTCAAATTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaaatttttcttgcactcattactagcttgattcaaggaatacttaatttttctcgcactcgttactcccatagacccatagacggtattttttatactgtatctactttttttctag
species | Zea mays |
transcript | GRMZM5G862538_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTTCAAATTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCG GTGGACCTTTTATACAAAGGAACTATGAGAGTTTTGCTTGTATTACTGCCTEST: gi|31351324|gb|CD435681.1|CD435681
genomic: TTTTCAAATTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaaattttt ... ttttttctagGTGGACCTTTTATACAAAGGAACTATGAGAGTTTTGCTTGTATTACTGCAT
EST: TTTTCAAATTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCG GTGGACCTTTTATACAAAGGAACTATGAGAGTTTTGCTTGTATTACTGCATEST: gi|38229577|gb|CF919890.1|CF919890
genomic: TTTTCAAATTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaaattttt ... ttttttctagGTGGACCTTTTATACAAAGGAACTATGAGAGTTTTGCTTGTATTACTGCAT
EST: TTTTCAAATTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCG GTGGACCTTTTATACAAAGGAACTATGAGAGTTTTGCTTGTATTACTGCAT
genomic: TTTTCAAATTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaaattttt ... ttttttctagGTGGACCTTTTATACAAAGGAACTATGAGAGTTTTGCTTGTATTACTGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCAATTCACAGAAAGGTTGGCCGTTTTTTCAGCGGTTGCTTGTTGCTCTTTTCAAATTCATGGAACCATATCTGAGAAATGCTGAACTCCCAGAGGCGgtaaatttttcttgcactcattactagcttgattcaaggaatacttaatttttctcgcactcgttactcccatagacccatagacggtattttttatactgtatctactttttttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG