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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatttggcaacttgtttagatttctggaaaaatatttatatatctgataagagacttcttagtcattagaggtacgaaagggtaccttaatcgt...

Basic information

species Zea mays
transcript GRMZM5G850355_T08
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T08 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 4
TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatttggcaacttgtttag---atttctggaaaaatatttatatatctgataagag-----acttcttagtcattagaggtacgaaagggtaccttaatcgt------------------------------------------------------------------------
|||||||||||| ||||| |||||||| |||||||||||||| || || |||||||||||||||||||||||||||||      |||  ||  |  |||     ||   |   | ||   || ||| | |  |||        | || | | | | | |   |     |  | |    | |  |                                                                        
TGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAGgtg--gttttttacagttcatttgatttatacttcagataactattgtatgttttgtaaagacatatatttttcaataaattgctatttcggatagcatgcaatttttcatgtacgacagtcatgatcttttccatcatttacttatttctcatgattgttcttcctttttctaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56382484|gb|CV985153.1|CV985153
EST:     CAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: CAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|60354522|gb|DN221495.1|DN221495
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|88757728|gb|DY541869.1|DY541869
EST:     GGTGAGAAAAAGTCGAAAGCAGGGCACAGCAGTATTATCGGGTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTG
genomic: GGTGAGAAAAAGTCGAAAGCAGG-CACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTG
EST: gi|211535406|gb|FL360267.1|FL360267
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCT
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCT
EST: gi|71331106|gb|DR802380.1|DR802380
EST:     AAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: AAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211040642|gb|FL333768.1|FL333768
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211302509|gb|FL360539.1|FL360539
EST:     GGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGT
genomic: GGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGG-TTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGT
EST: gi|67025317|gb|CO454066.1|CO454066
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|15427202|gb|BI543024.1|BI543024
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|12967998|gb|BG264945.1|BG264945
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211362042|gb|FL326986.1|FL326986
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|9825003|gb|BE575205.1|BE575205
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|5895580|gb|AW036826.1|AW036826
EST:     GTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: GTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|5456381|gb|AI834071.1|AI834071
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211145087|gb|FL319815.1|FL319815
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATTGCA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGAT-GCA
EST: gi|71331110|gb|DR802381.1|DR802381
EST:     TGGTGAGAAAAAGT-GAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211218545|gb|FL338337.1|FL338337
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAA
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|32868632|gb|CF008314.1|CF008314
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|32865823|gb|CF005505.1|CF005505
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211352174|gb|FL343457.1|FL343457
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCA
EST: gi|28931244|gb|CB334605.1|CB334605
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|32934694|gb|CF039506.1|CF039506
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|67023284|gb|CO452033.1|CO452033
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|60359187|gb|DN226160.1|DN226160
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|16918711|gb|BM073864.1|BM073864
EST:     AGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTG-GCGAGAGACTGCTGCTGTGATGCAG
genomic: AGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211100498|gb|FL307608.1|FL307608
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211248017|gb|FL308567.1|FL308567
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGGAGACTGCTGCTGTGATGCA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAG-AGACTGCTGCTGTGATGCA
EST: gi|32912475|gb|CF017287.1|CF017287
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|5456374|gb|AI834064.1|AI834064
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|60341905|gb|DN208878.1|DN208878
EST:     AAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: AAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|29544503|gb|CB604883.1|CB604883
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|6020544|gb|AW065472.1|AW065472
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211520278|gb|FL356684.1|FL356684
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGGAGACTGCTGCTGTGATGCA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAG-AGACTGCTGCTGTGATGCA
EST: gi|211408164|gb|FL390201.1|FL390201
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTG
EST: gi|14243343|gb|BG841010.2|BG841010
EST:     AGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: AGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211030291|gb|FL309707.1|FL309707
EST:     GGTGAGAAAWAGTCGAAAGCAGGCACAGCAGATATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGGAGACTGCTGCTGTGATGCA
genomic: GGTGAGAAAAAGTCGAAAGCAGGCACAGCAG-TATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAG-AGACTGCTGCTGTGATGCA
EST: gi|211218837|gb|FL350383.1|FL350383
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211312008|gb|FL324789.1|FL324789
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGGAGACTGCTGCTGTGATGCA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAG-AGACTGCTGCTGTGATGCA
EST: gi|211028588|gb|FL333340.1|FL333340
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211227292|gb|FL365228.1|FL365228
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211411607|gb|FL320443.1|FL320443
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|60355411|gb|DN222384.1|DN222384
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|31910204|gb|CD651307.1|CD651307
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211518118|gb|FL378391.1|FL378391
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGGAGACTGCTGCTGTGATGCA
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAG-AGACTGCTGCTGTGATGCA
EST: gi|211375549|gb|FL335394.1|FL335394
EST:     TGGTGAGAAAAAGTCGAGAGSAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211401638|gb|FL329192.1|FL329192
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTG
EST: gi|211372616|gb|FL325639.1|FL325639
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAACAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|211062082|gb|FL465318.1|FL465318
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|67010331|gb|CO439080.1|CO439080
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATACCTGTAACACAGCTTGTGCGGGAGACTGCTGCTGTGATGCAG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCGAGAGACTGCTGCTGTGATGCAG
EST: gi|116828057|gb|EC872016.1|EC872016
EST:     TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG                         GAGCATATAC-TGTAACACAGCTTGTGCG
genomic: TGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatt ... tcaaatgcagGAGCATATACCTGTAACACAGCTTGTGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAGgtataacatttggcaacttgtttagatttctggaaaaatatttatatatctgataagagacttcttagtcattagaggtacgaaagggtaccttaatcgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaata