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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacactgtcttggttgatcttgtattcatttttattttctattttggaatcagaatacattacattacaattgtggtgaagtttaatgtgattgttgaagttatggactttaatgcatcatctcaattgccaagcctttctctatcatgttttattcatgcacttttcttgcattgttttcag

Basic information

species Zea mays
transcript GRMZM5G850355_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211040642|gb|FL333768.1|FL333768
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211401638|gb|FL329192.1|FL329192
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211408164|gb|FL390201.1|FL390201
EST:     GTGCAAAATATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211302509|gb|FL360539.1|FL360539
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211411607|gb|FL320443.1|FL320443
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|12967998|gb|BG264945.1|BG264945
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|88757728|gb|DY541869.1|DY541869
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGG
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGG-
EST: gi|211017647|gb|FL189747.1|FL189747
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCYATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211362042|gb|FL326986.1|FL326986
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     G-GCAAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTTTATAG                         TGGGATGGGTCCAGATTTTCGTGTTTTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGC-AAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|15427202|gb|BI543024.1|BI543024
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|71331110|gb|DR802381.1|DR802381
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGT-GAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211312008|gb|FL324789.1|FL324789
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|8367928|gb|BE050873.1|BE050873
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211352174|gb|FL343457.1|FL343457
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|28931244|gb|CB334605.1|CB334605
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|31910204|gb|CD651307.1|CD651307
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211535406|gb|FL360267.1|FL360267
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211100498|gb|FL307608.1|FL307608
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32934694|gb|CF039506.1|CF039506
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|5456374|gb|AI834064.1|AI834064
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211227292|gb|FL365228.1|FL365228
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|6020544|gb|AW065472.1|AW065472
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211158124|gb|FL164253.1|FL164253
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGCAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211218837|gb|FL350383.1|FL350383
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATAGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTATGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|5456381|gb|AI834071.1|AI834071
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|60359658|gb|DN226631.1|DN226631
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGA
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGA
EST: gi|60355411|gb|DN222384.1|DN222384
EST:     CTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: CTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211372616|gb|FL325639.1|FL325639
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211028588|gb|FL333340.1|FL333340
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 814

GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 733

GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 623

GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 530

GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacactgtcttggttgatcttgtattcatttttattttctattttggaatcagaatacattacattacaattgtggtgaagtttaatgtgattgttgaagttatggactttaatgcatcatctcaattgccaagcctttctctatcatgttttattcatgcacttttcttgcattgttttcag

- - - - - - - - - - - - - - -  TTGGAG