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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGTACATTGGTGTTTAGCAATTATAAACGTGAAGGAAAATTTCTTTCAGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataactgattcgtccagaataaagtttggcataaaaataaattccagctttgacagctagaaaactgtgcccattcgctcttattcatgcatgc...

Basic information

species Zea mays
transcript GRMZM5G849959_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241159|gb|DT649073.1|DT649073
EST:     AGTTTCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTG                         GCTCGATATTTTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGGTAATCAA
genomic: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataa ... ttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGA-GTAATCAA
EST: gi|113845654|gb|DW957590.1|DW957590
EST:     AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGT-CCAAAAGTACTG                         GCTCGATANATTTCAGAGGAAGTG
genomic: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataa ... ttcaatgcagGCTCGATATATTTCAGAGGAAGTG
EST: gi|166444165|gb|EG132079.1|EG132079
EST:     AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTG                         GCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAA
genomic: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataa ... ttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAA
EST: gi|71309671|gb|DR791114.1|DR791114
EST:     AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTG                         GCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAAC
genomic: AGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataa ... ttcaatgcagGCTCGATATATTTCAGAGGAAGTGAAGGACAAAAGTAACAGAGTAATCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATGTACATTGGTGTTTAGCAATTATAAACGTGAAGGAAAATTTCTTTCAGTATCTTGATTCCCTTGGTGGCATGGATCATAATGTACCAAAAGTACTGgtaagcataactgattcgtccagaataaagtttggcataaaaataaattccagctttgacagctagaaaactgtgcccattcgctcttattcatgcatgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA