1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTGCTTGTGGAAAAAATGGTTATGATTACAAATCTGTTAAAAGATGGACCTCCCAAAGGAAGTTGGGATATGAACTCATTGAATGCGATAAAgtaatgtaaatgttgcattctttttttacttgttcctacctttgtgtggcttgtgtttttctcatgttgctttctgaatttctttatag
species | Zea mays |
transcript | GRMZM5G849959_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATGGACCTCCCAAAGGAAGTTGGGATATGAACTCATTGAATGCGATAAA ATATTTGTCCCTGTGCATAAAGATGTACATTGGTGTTTAGCAATTATAAACEST: gi|76289857|gb|DV029425.1|DV029425
genomic: GATGGACCTCCCAAAGGAAGTTGGGATATGAACTCATTGAATGCGATAAAgtaatgtaaa ... ttctttatagATATTTGTCCCTGTGCATAAAGATGTACATTGGTGTTTAGCAATTATAAAC
EST: GATGGACCTCCCAAAGGAAGTTGGGATATGAACTCATTGAATGCGATAAA ATATTTGTCCCTGTGCATAAAGATGTACATTGGTGTTTAGCAATTATAAACEST: gi|78110343|gb|DV528755.1|DV528755
genomic: GATGGACCTCCCAAAGGAAGTTGGGATATGAACTCATTGAATGCGATAAAgtaatgtaaa ... ttctttatagATATTTGTCCCTGTGCATAAAGATGTACATTGGTGTTTAGCAATTATAAAC
EST: GATGGACCTCCCAAAGGAAGTTGGGATATGAACTCATTGAATGCGATAAA ATATTTGTCCCTGTGCATAAAGATGTACATTGGTGTTTAGCAATTATAAAC
genomic: GATGGACCTCCCAAAGGAAGTTGGGATATGAACTCATTGAATGCGATAAAgtaatgtaaa ... ttctttatagATATTTGTCCCTGTGCATAAAGATGTACATTGGTGTTTAGCAATTATAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCTTGTGGAAAAAATGGTTATGATTACAAATCTGTTAAAAGATGGACCTCCCAAAGGAAGTTGGGATATGAACTCATTGAATGCGATAAAgtaatgtaaatgttgcattctttttttacttgttcctacctttgtgtggcttgtgtttttctcatgttgctttctgaatttctttatag
- - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA