Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCCAACATGGTTACACAAGCAGAAAGAGAAGCAAAGGATTATATGGGCATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccccctgctgttctaatcagcttgtgatgtgtgcaattccatcactcttttttagaacattaaaataatctgaccacgttctaaaaacttttcccatgatactctctgtgtag

Basic information

species Zea mays
transcript GRMZM5G846198_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G846198_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g44510.1 (Oryza sativa), 5'ss of exon 12
ATGGCCAACATGGTTACACAAGCAGAAAGAGAAGCAAAGGATTATATGGGCATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccccctgctgttctaatcagcttgtgatgtgtgcaattccatcactcttttttagaacattaaaataatctgaccacgttctaaaaacttttcccatgatactctctgtgtag
||||||||||||||| ||||| ||||||||||||||  | |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||    |    || | |  | |||  |||||      | ||   ||||| ||  ||| ||    |   ||   |     |  |||  |  | | | || |  ||| ||| ||  |||||
ATGGCCAACATGGTTGCACAAACAGAAAGAGAAGCAGCGAATTATATGGGCATACAAGATCTTGTTTCTAGATGTCATATTTCCACTTTCACTGAGGAAGgtattttctta-tgttatattcatc--cttgtag---attcatgaccatc-cttatttatacgttaactaagccacagttcatcgtgatggataatattactctgacactttccatgtag

upper sequence: GRMZM5G846198_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G20020.1 (Glycine max), 5'ss of exon 32
ATGGCCAACATGGTTACACAAGCAGAAAGAGAAGCAAAGGATTATATGGGCATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccccctgctgttcta-atcagcttgtgatgtgtgcaattccatcactcttttttagaacattaaaataatctgaccacgttctaaaaacttttc-----ccatgatactctctgtgtag---------------------------------
|||||| |||||||| || ||||||||||| |||||  | || || ||||||||||| || ||||| || |||||||| ||||| |||||  ||  ||||||| |       |  | ||||  ||||  |         |||  ||   |   ||| || |  |   ||||  | ||     ||| | |   | || |  |     | | ||| ||     || |                                  
ATGGCCTACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATAATTTGGGCATATAAAATTTTATTCCTTGATGTCATCTTTCCCCTTTCCTTGGAGAAGgtatcatgattttcttcttctgcatcaaatccc-----atgcttttattttgttctcttctgcactcttaatgtcatggtgtcacatgcaccacacatggcattgacaaggatgctggtaatgaaaagaaaatttttacttaaaaatttgtgtttgcag

upper sequence: GRMZM5G846198_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G30230.1 (Glycine max), 5'ss of exon 33
ATGGCCAACATGGTTACACAAGCAGAAAGAGAAGCAAAGGATTATATGGGCATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccccctgctgttctaatcagcttgtgatgtgtgcaattccatcactcttttttagaacattaaaataatctgaccacgttctaaaaacttttcccatgatactctctgtgtag
 ||||| |||||||| || ||||||||||| |||||  | || || ||||||||||| |||||||| || ||||||||||| || |||||  ||  ||||||| | |          |    ||||  ||   |||  |    ||   |  || ||    |    |||  |||  || ||| ||        |||| ||   ||| |             
GTGGCCCACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATAATTTGGGCATATAAAATCTTATTCCTAGATGTCATTTTCCCCCTTTCTTTGGAGAAGgtatcacagtttcttcttctgcatcaagtt-ccatgcttttggtttt-tgtcttttgcacaattaatttcaatg-tcagactacac------aactcttagaatgttgg-----------

upper sequence: GRMZM5G846198_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G13400.1 (Glycine max), 5'ss of exon 35
ATGGCCAACATGGTTACACAAGCAGAAAGAGAAGCAAAGGATTATATGGGCATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtacccc--ccccctgctgttcta-atca--------gcttgtgatgtgtgcaattc-catcactcttttttagaacat----taaaataatctgaccacgtt--ctaaaaact----tttcccatgatactctctgtgtag--------------------
 ||||| |||||||| || ||||||||||| |||||  | |  || ||||||||||| |||||||| || ||||||||||| || |||||  ||  ||||||||| |     | |  | ||||  ||||        |||| |  | | ||   ||  ||  | |  |||  |   ||      | |||  | |||| | | |    || || |    |  |  |    |   ||||| ||                     
GTGGCCCACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAAGAATTTGGGCATATAAAATCTTATTCCTAGATGTCATTTTCCCCCTTTCTTTGGAGAAGgtaccacagtttcttcttcttctgcatcaagttccatgctttttgtttttgtcttttgcactattaatttcaatgtcacactacacaatgctgtgacaaagataatgaagaattaaaatcccttacaggaaaatctgtctaaaatctaccaatattatgcag

upper sequence: GRMZM5G846198_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 33
ATGGCCAACATGGTTACACAAGCAGAAAGAGAAGCAAAGGATTATATGGGCATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccccctg----ctgttctaat-cagcttg-tgatgtgtg-caattccatcactcttttttagaacattaaaataatctgaccacgt---tctaaaaacttttcccatgatactctctgtgtag
||||||||||||||| || ||||||||||| |||||  | ||||| ||||||||||| ||| | || || ||||| ||||| ||||||||  ||   ||||||               ||| |  ||   ||  || ||   |||  | ||| |||   |||| ||  |      ||  | |  ||      |   | |  | | | |  | |||    | ||||     
ATGGCCAACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATTATCTGGGCATATAAAATCCTGTTCCTTGATGTTATTTTCCCACTTTCTTTGGAAAAGgtaatttggtttcaagtcctgcttaaacatagagtgctgccttgtttccatttcattcatcttcttatgctttccaacttcacatgcatgtatagcttttcacaatctatcaatgtgtatatctgcag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32930138|gb|CF034950.1|CF034950
EST:     CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAG                         GTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
genomic: CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccc ... ctctgtgtagGTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
EST: gi|32850563|gb|CD990244.1|CD990244
EST:     CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAG                         GTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
genomic: CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccc ... ctctgtgtagGTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
EST: gi|32834967|gb|CD974645.1|CD974645
EST:     CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAG                         GTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
genomic: CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccc ... ctctgtgtagGTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
EST: gi|32835266|gb|CD974944.1|CD974944
EST:     CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAG                         GTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
genomic: CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccc ... ctctgtgtagGTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
EST: gi|116823777|gb|EC867342.1|EC867342
EST:     CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAG                         GTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
genomic: CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccc ... ctctgtgtagGTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
EST: gi|32850558|gb|CD990239.1|CD990239
EST:     CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAG                         GTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
genomic: CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccc ... ctctgtgtagGTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
EST: gi|67022576|gb|CO451325.1|CO451325
EST:     CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAG                         GTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
genomic: CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccc ... ctctgtgtagGTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
EST: gi|32850631|gb|CD990312.1|CD990312
EST:     CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAG                         GTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG
genomic: CATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccc ... ctctgtgtagGTGATTTTTGTTGATGCTGATCAAATTGTGAGAGCAGACATGGGAGAATTG