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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTCGTAAGGAGCCATTTTTTTACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattcagtctatttgttctttgcaatgaactagtcaactagctatgttgtttacatttcccatgtcatgtagccagagatttcatttctgtcaag...

Basic information

species Zea mays
transcript GRMZM5G845755_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G845755_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g02350.1 (Oryza sativa), 5'ss of exon 6
ATTTTTCGTAAGGAGCCATTTTTTTACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattcagtctatttgttctttgcaatgaa--ctagtcaacta-gctatgttgtttacatttcccatgtcatgtagccagagatttcatttctgtcaag
|| || || |||||||||||||| || |||||||||||||||||||||||||||||||| || |||||      ||||  | ||| |  |     ||||     |  |||  | |  |||   || |  |||  | | ||||  |  | |     |    | | ||   
ATCTTCCGCAAGGAGCCATTTTTCTATGGTCATGACAACCATGATCAACTTGTTAAGATCGCAAAGgtgatttctcagcttgtttatgttaaaagatgatgttcatacaagaatgaaatgcatttcatgtttagcttatcattcatactgtacactatggtttatc---

upper sequence: GRMZM5G845755_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S63_208V6.1 (Physcomitrella patens), 5'ss of exon 7
ATTTTTCGTAAGGAGCCATTTTTTTACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattcagtctatttgttctttgcaatgaactagtca------actagctatgttgttta--catttcccatgtcatgtagccagagatttcatttctgtcaag------------------------------------
|| ||||| ||||||||||| ||||| || ||||||||  ||||||| ||||| ||||| ||||||||   |    |    ||||  | |  ||  | ||  |||||      | | |  || ||  | |  | |||| | |    |||  |   ||      |||   ||                                       
ATCTTTCGGAAGGAGCCATTCTTTTATGGACATGACAATTATGATCAGCTTGTGAAGATTGCCAAGgtgctcggaaatctcatttactatcagccttcaatcagtcactgctcattcgtaatttttctgaatcgtttctcctcctgtgtttctcaaggccatgtttaaatcttcgttctaaatctaatctttgttgttacctgaaatcag

upper sequence: GRMZM5G845755_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S165_119V6.1 (Physcomitrella patens), 5'ss of exon 7
ATTTTTCGTAAGGAGCCATTTTTTTACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattcagtctatttgttc-tttgcaatgaactagtcaactagc-tatgttgtttacatttcccatgtcatgtagccagagatttcatttctgtcaag----------------------------------------
|| ||||| ||||||||||| ||||| || ||||||||  ||||||||||||| ||||| || |||||  |    ||||  ||   |   |||||  | ||  ||| |  || |   | || ||||  ||    |     |      |  |  ||       | ||||                                        
ATATTTCGGAAGGAGCCATTCTTTTATGGGCATGACAATTATGATCAACTTGTGAAGATTGCTAAGgtgcagtggcagttcatacatagatttgccttcaagcagttatatatcactttttatttattttgtataaaaagtcatattactgtctttcgcaacgccaagttgtgttttgagccttatctttgtgggtgtctgataccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5846756|gb|AI999839.1|AI999839
EST:     CCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
genomic: CCATGATCAACTTGTTAAGATAGCCAAGgttgacattc ... ttattatcagGTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
EST: gi|60350778|gb|DN217751.1|DN217751
EST:     CANNNNNNNACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTTTACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattc ... ttattatcagGTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
EST: gi|94476026|gb|EB704984.1|EB704984
EST:     CCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
genomic: CCATGATCAACTTGTTAAGATAGCCAAGgttgacattc ... ttattatcagGTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
EST: gi|61117730|gb|DN558691.1|DN558691
EST:     CANNNNNNNACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTTTACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattc ... ttattatcagGTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
EST: gi|60354727|gb|DN221700.1|DN221700
EST:     CANNNNNNNACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTTTACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattc ... ttattatcagGTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
EST: gi|4609748|gb|AI600587.1|AI600587
EST:     TGTTAAGATAGCCAAG                         GTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
genomic: TGTTAAGATAGCCAAGgttgacattc ... ttattatcagGTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
EST: gi|61117733|gb|DN558694.1|DN558694
EST:     CANNNNNNNACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTTTACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattc ... ttattatcagGTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
EST: gi|61117731|gb|DN558692.1|DN558692
EST:     CANNNNNNNACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTTTACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattc ... ttattatcagGTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
EST: gi|61117732|gb|DN558693.1|DN558693
EST:     CANNNNNNNACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
genomic: CATTTTTTTACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattc ... ttattatcagGTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
EST: gi|148990947|gb|EE032376.2|EE032376
EST:     ACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAG                         GTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG
genomic: ACGGTCATGACAACCATGATCAACTTGTTAAGATAGCCAAGgttgacattc ... ttattatcagGTACTTGGAACAGATGGGCTGAATGTCTATTTGAACAAGTACAGAATTGAG