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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGTGGAAAATATTAACGATGCGGTTGAATTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCCGGATGCAGCATCAGgtatgttgcaggcttgtaacctatgtcagaatctgcctttgcttcttaaatctttaccatgcattttaccatagcacattagtgacagaagtgattaaatcattctctggttataccatcctatctgaatctgaaaaaatgatctgtttggtttacag

Basic information

species Zea mays
transcript GRMZM5G844195_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G844195_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 5
CGATGTGGAAAATATTAACGATGCGGTTGAATTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCCGGATGCAGCATCAGgtatgttgcaggcttgtaacctatgtcagaatctgcctttgcttcttaaatctttaccatgcattttaccatagcacattagtgacagaagtgattaaatcattctctggttataccatcctatctgaatctgaaaaaatgatctgtttggtttacag
 ||||  || |  |||||||  || ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| || | ||| |||| ||| |       |   |   |||   | || || ||  |   ||  |   |   |    |  || |  |       ||  | | |    ||                                                  
GGATGCTGACAGCATTAACGTCGCAGTTGAGTTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTCC-GAATGCAACATCAGgtttgattcag-cttgcaacttg-----aagcttttttttttcttttcaagctgaagtctgagtacaa--gtgctgcgatactttcccctaccatgcatttaccgcct--------------------------------------------------

upper sequence: GRMZM5G844195_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 6
CGATGTGGAAAATATTAACGATGCGGTTGAATTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTCC-----CGGATGCAGCATCAGgtatgttgcaggcttgtaacctatgtcagaatctgcctt-tgcttcttaaatctttaccatgcattt-taccatagcacattagtgacagaagtgattaaatcattctctggttataccatcctatctgaatctgaaaaaatgatctgtttggtttacag
 ||     | | | | |  ||||| || ||||||||||| |||||||||| ||||||||| || || ||||| |     | | ||||||||||||| ||||  |  | | ||||   | ||  |   |   || ||      | | |   ||  | | |   | ||||||| ||| ||||  | || |    |||||||                                                       
GGAATCTAATAGTGTGATGGATGCAGTAGAATTTGTTCTACAGAATTTCACAGAAATGAATAAGCTTTGGGTTCGGTTGCAGTTGCAGCATCAGgtttgttcaactcctttaactcttttctaatcttattttatgagatgcatagcaccacagtacttgcatgccatagc-cat-agtggtaaaaat----aaatcatg------------------------------------------------------

upper sequence: GRMZM5G844195_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 5
CGATGTGGAAAATATTAACGATGCGGTTGAATTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTCC-----CGGATGCAGCATCAGgtatgttgcaggcttgtaacctatgtcagaatctgcctttgcttcttaaatctttaccatgcattttaccatagcacattagtgacagaagtgat--taaatcattctctggttataccatcctatctgaatctgaaaaaatgatctgtttggtttacag
 ||     | | | | |  || || |||||||||||||| |||||||||| ||||||||| || || ||||| |     | | |||||||||||||  |||  |    | ||||   | ||  |      |||   || | | ||   || ||  ||   |||       |  |||  | ||| || |   ||||||||                                                       
GGAATCTAATAGTGTGATGGACGCAGTTGAATTTGTTCTACAGAATTTCACAGAAATGAATAAGCTTTGGGTTCGGTTGCAGTTGCAGCATCAGgttcgtttaacttctttaactcttttctaa-----tcttattttatgagatgcatagcac-cacagtacttgcatgccatagccatagaggtaaaaataaatcatg------------------------------------------------------