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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCGTGGAGTTTGTTCGTCCAGGATATTGCCTTCGGAGGACGATAGTCTTGCAAGGGCTCTTCGCTCGTGCCACTCGCAGCCTTTCTCATTCGTAGAGgtaatgatttgctccgtgctgaaataatattatggcattgttggttatatcattttcttggactagtttatcatctgcacatgcatgatacggatttttg...

Basic information

species Zea mays
transcript GRMZM5G843914_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G843914_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g55890.1 (Oryza sativa), 5'ss of exon 6
---ATACCGTGGAGTTTGTTCGTCCAGGATATTGCCTTCGGAGGACGATAGTCTTGCAAGGGCTCTTCGCTCGTGCCACTCGCAGCCTTTCTCATTCGTAGAGgtaatgatttgctccgtgctg-----aaataatattatggcattgttggttatatcattttcttggactagt-ttatcatctgcacatgcatgatacggatttttg-----------------------------------------------------------------
    ||||| ||  |||||||||||||||| |  || |||||||||   |||||||| || |||||||| || |||||||| || |||||||||||  | ||||||||||||  | | |   |       | ||||   | | | | ||   | |||  |  |  | ||   ||| |  | ||  |   ||||   | |       |||                                                                 
GTCGTACCGCGGCATTTGTTCGTCCAGGATTTCACCATCGGAGGAC---AGTCTTGCGAGAGCTCTTCGGTCATGCCACTCTCAACCTTTCTCATTTCTGGAGgtaatgattcacactgcatttttttttactaattacaagtcctcgtgcatgataagaaatgatgggtacagtgtggttatgagattatgcgcaacataacaggttgtgaaagtttccgtctggacctgtataagattctaagttgcttgtttttatgaattttgtgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60354387|gb|DN221360.1|DN221360
EST:     TTGCAAGGGCTCTTCGCTCGTGCCACTCGCAGCCTTTCTCATTCGTAGAG                         GAAGGAGACACCGGTGCATCAGGGATGATAAGCTTAGCAGAGTATCTAGGA
genomic: TTGCAAGGGCTCTTCGCTCGTGCCACTCGCAGCCTTTCTCATTCGTAGAGgtaatgattt ... ttttgcgcagGAAGGAGACACCGGTGCATCAGGGATGATAAGCTTAGCAGAGTATCTAGGA
EST: gi|29576778|gb|CB616890.1|CB616890
EST:     TTGCAAGGGCTCTTCGCTCGTGCCACTCGCAGCCTTTCTCATTCGTAGAG                         GAAGGAGACACCGGTGCATCAGGGATGATAATCTTAGCAGAGTATCTAGGA
genomic: TTGCAAGGGCTCTTCGCTCGTGCCACTCGCAGCCTTTCTCATTCGTAGAGgtaatgattt ... ttttgcgcagGAAGGAGACACCGGTGCATCAGGGATGATAAGCTTAGCAGAGTATCTAGGA
EST: gi|211429393|gb|FL306558.1|FL306558
EST:     TTGCAAGGGCTCTTCGCTCGTGCCACTCGCAGCCTTTCTCATTCGTAGAG                         GAAGGAGACACCGGTGCATCAGGGATGATAAGCTTAGCAGAGTATCTAGGA
genomic: TTGCAAGGGCTCTTCGCTCGTGCCACTCGCAGCCTTTCTCATTCGTAGAGgtaatgattt ... ttttgcgcagGAAGGAGACACCGGTGCATCAGGGATGATAAGCTTAGCAGAGTATCTAGGA