1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CATCATCAAGGACAAGGACAACGTCACTCTGGAGGACGTGCTGCAACCTGGCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataaccaattaattctcttgaacccatcttctccgaaggtaatcatctgtaacgaaatataattgacatgcgcaaccaatctgatgcag
species | Zea mays |
transcript | GRMZM5G836250_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAAGAACATGCTCGCCGCGGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|149064613|gb|EE286484.2|EE286484
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|149085230|gb|EE174737.2|EE174737
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|149056940|gb|EE156494.2|EE156494
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|89759141|gb|DY688054.1|DY688054
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|83279121|gb|DV943129.1|DV943129
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|50327741|gb|CO522867.1|CO522867
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|89759142|gb|DY688055.1|DY688055
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|211007786|gb|FL012051.1|FL012051
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGGTGTCA-TGGCTTCACGEST: gi|149088446|gb|EE177549.2|EE177549
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGG-TGTCAATGGCTTCACG
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|71768088|gb|DR966025.1|DR966025
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCCTCAEST: gi|149095912|gb|EE181574.2|EE181574
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|32838746|gb|CD978427.1|CD978427
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: ACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|148983226|gb|EE029190.2|EE029190
genomic: ACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: NCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTEST: gi|71768089|gb|DR966026.1|DR966026
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTT
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCCTCAEST: gi|71770843|gb|DR968780.1|DR968780
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|149085229|gb|EE174736.2|EE174736
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|148932776|gb|EE285437.2|EE285437
genomic: GCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|71317308|gb|DR795339.1|DR795339
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTEST: gi|211005021|gb|FL012048.1|FL012048
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACT
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCEST: gi|148929799|gb|EE285436.2|EE285436
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTC
EST: AAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|32920564|gb|CF025376.1|CF025376
genomic: AAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: ACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|91055488|gb|EB165906.1|EB165906
genomic: ACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: CCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGCTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|88752752|gb|DY536893.1|DY536893
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|71770842|gb|DR968779.1|DR968779
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: ACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|74244032|gb|DT651946.1|DT651946
genomic: ACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|94476278|gb|EB705236.1|EB705236
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|50332538|gb|CO527664.1|CO527664
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|71757120|gb|DR955057.1|DR955057
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCATCAAGGACAAGGACAACGTCACTCTGGAGGACGTGCTGCAACCTGGCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataaccaattaattctcttgaacccatcttctccgaaggtaatcatctgtaacgaaatataattgacatgcgcaaccaatctgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC