1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCTTGAGTATGTTCCGGAGACAGTTCATCGAGTTGTGAAACATCACAACAAGATGCACCAACGCATGCCACTTATTTATGTGAAGCTTTATATGTACCAGgtaatattttgtcccttcctcttggttattgcattagttgtacttaacttattttttggattcagaatgtttattgctgcagctaaaaaagctattgtcttttgacctaaatattggctgcctctgatggatgcgctagttcttttttcgtattgattttgtattggtttttggcag
species | Zea mays |
transcript | GRMZM5G835235_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGATGCACCAACGCATGCCACTTATTTATGTGAAGCTTTATATGTACCAG ATATGTAGAGCATTGGCTTACATTCATGGTACAATCGGTGTCTGCCACAGAEST: gi|166413835|gb|EG065949.1|EG065949
genomic: AGATGCACCAACGCATGCCACTTATTTATGTGAAGCTTTATATGTACCAGgtaatatttt ... tttttggcagATATGTAGAGCATTGGCTTACATTCATGGTACTATCGGTGTCTGCCACAGA
EST: AGATGCACCAACGCATGCCACTTATTTATGTGAAGCTTTATATGTACCAG ATATGTAGAGCATTGGCTTACATTCEST: gi|211480778|gb|FL342573.1|FL342573
genomic: AGATGCACCAACGCATGCCACTTATTTATGTGAAGCTTTATATGTACCAGgtaatatttt ... tttttggcagATATGTAGAGCATTGGCTTACATTC
EST: AGATGCACCAACGCATGCCACTTATTTATGTGAAGCTTTATATGTACCAG ATATGTAGAGCATTGGCTTACATTCATGGTACTATCGGTGTCTGCCACAGA
genomic: AGATGCACCAACGCATGCCACTTATTTATGTGAAGCTTTATATGTACCAGgtaatatttt ... tttttggcagATATGTAGAGCATTGGCTTACATTCATGGTACTATCGGTGTCTGCCACAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTGAGTATGTTCCGGAGACAGTTCATCGAGTTGTGAAACATCACAACAAGATGCACCAACGCATGCCACTTATTTATGTGAAGCTTTATATGTACCAGgtaatattttgtcccttcctcttggttattgcattagttgtacttaacttattttttggattcagaatgtttattgctgcagctaaaaaagctattgtcttttgacctaaatattggctgcctctgatggatgcgctagttcttttttcgtattgattttgtattggtttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC