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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCAAACAATTTTTGCTCAAGTAGTACTGAAGGCCTTCCAAGAACTTGGCAACCTGGTGAAACAAATGATCCAATAAATCAAATTCCGTCACTCCGCCgtcagtacctcatgatatttctgataatcatcttgtagtgcaaaatacttactccgattctgtccatctctactatttctaagaattatgtcttaaccat...

Basic information

species Zea mays
transcript GRMZM5G833032_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G833032_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g45670.1 (Oryza sativa), 5'ss of exon 5
GGTTCAAACAATTTTTGCTCAAGTAGTACTGAAGGCCTTCCAAGAACTTGGCAACCTGGTGAAACAAATGATCCAATAAATCAAATTCCGTCACTCCGCCgtcagtacctcatgatatttctgataatcatcttgtagtgcaaaatacttactccgattctgtccatctctactatttctaagaattatgtcttaaccat--
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GCCCCCAACAATTTTTGCTCTAGCAGTACTGAAGGCCCTGCGAGGGCATGGCAACCTGGTGAAACTAATGATCAGATAAATCAAGTTCCGTCACTCCGCCgttagtacctcttaagatttttctttatatagttatctttctgcagtttgagtc--atattgcccatttttattgtttctgtggcttctgttttgatcttcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211267582|gb|FK993690.1|FK993690
EST:     GCAACCTGGTGAAACAAATGATCCAATAAATCAAATTCCGTCACTCCGCC                         TTATGCCAGATTTTGCGGGAGTGTACAGCTTCTTAGGTAGTGTTTTCGATC
genomic: GCAACCTGGTGAAACAAATGATCCAATAAATCAAATTCCGTCACTCCGCCgtcagtacct ... tttgatatagTTATGCCAGATTTTGCGGGAGTGTACAGCTTCTTAGGTAGTGTTTTCGATC
EST: gi|50330402|gb|CO525528.1|CO525528
EST:     GCAACCTGGTGAAACAAATGATCCAATAAATCAAATTCCGTCACTCCGCC                         TTATGCCAGATTTTGCGGGAGTGTACAGCTTCT
genomic: GCAACCTGGTGAAACAAATGATCCAATAAATCAAATTCCGTCACTCCGCCgtcagtacct ... tttgatatagTTATGCCAGATTTTGCGGGAGTGTACAGCTTCT
EST: gi|78079532|gb|DV507944.1|DV507944
EST:     GCAACCTGGTGAAACAAATGATCCAATAAATCAAATTCCGTCACTCCGCC                         TTATGCCAGATTTTGCGGGAGTGTACAGCTTCTTAGGTAGTGTTTTCGATC
genomic: GCAACCTGGTGAAACAAATGATCCAATAAATCAAATTCCGTCACTCCGCCgtcagtacct ... tttgatatagTTATGCCAGATTTTGCGGGAGTGTACAGCTTCTTAGGTAGTGTTTTCGATC
EST: gi|50330401|gb|CO525527.1|CO525527
EST:     GCAACCTGGTGAAACAAATGATCCAATAAATCAAATTCCGTCACTCCGCC                         TTATGCCAGATTTTGCGGGAGTGTACAGCTTCTTAGGTAGTGTTTTCGATC
genomic: GCAACCTGGTGAAACAAATGATCCAATAAATCAAATTCCGTCACTCCGCCgtcagtacct ... tttgatatagTTATGCCAGATTTTGCGGGAGTGTACAGCTTCTTAGGTAGTGTTTTCGATC