Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGTGTTCCTGAAGGAAAGAAAAGAGACCGGCGGAACGACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAGgtatcctgcttgctttctgatctgtatgtatgtagcccttgctgtttcctcgaagttggcttgtttcctcgaagttggcttcagtagagccattctgactaatggaacggtgttcactgtacataccagac

Basic information

species Zea mays
transcript GRMZM5G829928_T01
intron # 5
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G829928_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g01950.1 (Oryza sativa), 5'ss of exon 5
GTTAGTGTTCCTGAAGGAAAGAAAAGAGACCGGCGGAACGACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAGgtatcctgcttgctttctgatctgtatgtatgtagcccttgctgtttcctcgaagttggcttgtttcctcgaagttggcttcagtagagccattctgactaatggaacggtgttcactgtacataccagac
|||||||| |||||||||||||| || ||| || | || ||| ||||||| || || || || || || || |||||||| ||||||||||||   |||||| ||  |||    ||| ||   |    ||| |||      || | |     |  |  |    | ||  |  |  ||                                            
GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATCGACAAGgtactatgcttgtttcatgaatactatctactaa--tgttgttgtagtag-gaggcttcaaaggctaatgtgggctgtttgtatcag--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60340111|gb|DN207084.1|DN207084
EST:     ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAG                         A
genomic: ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAGgtatcctgct ... cataccagac-
EST: gi|60340111|gb|DN207084.1|DN207084
EST:     ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAG                         A
genomic: ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAGgtatcctgct ... cataccagac-
EST: gi|60340111|gb|DN207084.1|DN207084
EST:     ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAG                         A
genomic: ACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAGgtatcctgct ... cataccagac-