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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCTGAAACTATTAACGACGCAGTTGAATTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTTCGGATGCAACATCTGgtatattgcaggcttgtaacctaaggcagaatctgcctttgttccttaattttttaccatgcattttaccatgccacatgaatgacaccagtgattaaatctattcccgggtacgccattctatatgaaactgaaaaagatctgtttggtctatag

Basic information

species Zea mays
transcript GRMZM5G825524_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 5
GGATGCTGAAACTATTAACGACGCAGTTGAATTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTTCGGATGCAACATCTGgtatattgcaggcttgtaacctaaggcagaatctgcctttgttccttaattttttaccatgcattttaccatgccacatgaatgacaccagtgattaaatctattcccgggtacgccattctatatgaaactgaaaaagatctgtttggtctatag
||||||||| |  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |  | ||| |||| ||| | | ||    | |   |||  |  | ||  |     | ||  |   |   |||  |   | |  | ||    ||   || ||   ||                                                
GGATGCTGACAGCATTAACGTCGCAGTTGAGTTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTCCGAATGCAACATCAGgtttgattcag-cttgcaacttgaagc----ttttttttttcttttcaagctgaagtc-tgagtacaa--gtgctgcgatactttcccctaccat-gcatttaccgcct-----------------------------------------------

upper sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 6
GGATGCTGAAACTATTAACGACGCAGTTGAATTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTTCGGATGCAACATCTGgtatattgcaggcttgtaacctaaggcagaatctgcctttgttccttaattttttaccatgcattttaccatgccacatgaatgacac-----cagtgattaaatctattcccgggtacgccattctatatgaaactgaaaaagatctgtttggtctatag
|||  || | | | | |  || ||||| ||||||||||| |||||||||| ||||||||| || || ||||||||| ||||   |   | ||    |||| ||||   | |   |   | || | ||| |    | ||||| |   ||||||   ||||    || || ||| ||       |||| | |||   | ||  |                                               
GGAATCTAATAGTGTGATGGATGCAGTAGAATTTGTTCTACAGAATTTCACAGAAATGAATAAGCTTTGGGTTCGGTTGCAGT-TGCAGCAT----CAGgtttgt--tcaactcctttaact-cttttctaatcttattttatgagatgcatagcaccacagtacttgcatgccatagccatagtggtaaaaataaatcatg-----------------------------------------------

upper sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 5
GGATGCTGAAACTATTAACGACGCAGTTGAATTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTTCGGATGCAACATCTGgtatattgcaggcttgtaacctaaggcagaatctgcctttgttccttaattttttaccatgcattttaccatgccacatgaatgacaccagtgattaaatctattcccgggtacgccattctatatgaaactgaaaaagatctgtttggtctatag
|||  || | | | | |  |||||||||||||||||||| |||||||||| ||||||||| || || ||||||||| ||||     ||    ||      | | |||| |    |   | || | ||| |    | ||||| |   ||||||   ||||    || || ||| ||  ||  ||  |    |         | |                                         
GGAATCTAATAGTGTGATGGACGCAGTTGAATTTGTTCTACAGAATTTCACAGAAATGAATAAGCTTTGGGTTCGGTTGCAGT---TGCAGCATCAGgttcgtttaactt----ctttaact-cttttctaatcttattttatgagatgcatagcaccacagtacttgcatgccat-agccatagaggtaaaaataaatcatg-----------------------------------------

upper sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 5
lower sequence: EFJ27365 (Selaginella moellendorffii), 5'ss of exon 5
GGATGCTGAAACTATTAACGACGCAGTTGAATTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTTCGGATGCAACATCTGgtatattgcaggcttgtaacctaaggcagaatctgcctttgttccttaattttttaccatgcattttaccatgccacatgaatgacaccagtgattaaatctattcccgggtacgc---cattctatatgaaactgaaaaagatct--gtttggtctatag
||| |  |  | | | || || || || || ||||| |||||||||||||  |||||||| || |||||||| ||||||||||| | |||  | |  |  |     | ||   |   |   ||     |  | |  |  ||    |||| | | | ||    |  | ||| |           | ||  || ||  | ||| ||   | ||   |||||   | |  | ||| |  |  |  |||  ||
GGAAGGAGGTAGTGTCAATGATGCCGTGGAGTTTGTGCTTCAGAATTTCACGGAAATGAATAAGCTCTGGGTCCGGATGCAACACCAGgt-cagtatacacc----atctcgtgtcaagaatgtgagagagcatgcaccttagctcatgaagtgttcctgaacggaggaaggcttgagagtcctgaacgtagtcttgcgtatgcaggcttttgttatgagggtcaggatgatttaaggctattctgcag

upper sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 5
lower sequence: EFJ33136 (Selaginella moellendorffii), 5'ss of exon 5
GGATGCTGAAACTATTAACGACGCAGTTGAATTTGTTCTTCAGAATTTCATAGAAATGAACAAACTCTGGGTTCGGATGCAACATCTGgtatattgcaggcttgtaacctaaggcagaatctgcctttgttccttaattttttaccatgcattttaccatgccacatgaatgacaccagtgattaaatctattcccgggtacgc---cattctatatgaaactgaaaaagatct--gtttggtctatag
||| |  |  | | | || || || || || ||||| |||||||||||||  |||||||| || |||||||| ||||||||||| | |||  | | ||  |     | ||   |   |   ||     |  | |  |  ||    |||| | | | ||    |  | ||| |           | ||  || ||  | ||| ||   | ||   |||||   | |  | ||| |  |  |  |||  ||
GGAAGGAGGTAGTGTCAATGATGCCGTGGAGTTTGTGCTTCAGAATTTCACGGAAATGAATAAGCTCTGGGTCCGGATGCAACACCAGgt-cagtacacacc----atctcgtgtcaagaatgtgagagagcatgcaccttagctcatgaagtgttcctgaacggaggaaggcttgagagtcctgaacgtagtcttgcgtatgcaggcttttgttatgagggtcaggatgatttaaggctattctgcag