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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcactatcttttttgatcttgtattcatttaaattttctattttggaattggaatacattacaattgtgttgaagttcaatgttggttgttgttgaagttatggacctttagtgcatcttctcaattgtcaagttttttctatcacgttctattcatgcacttttcttgcattgttttcag

Basic information

species Zea mays
transcript GRMZM5G824831_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211252211|gb|FK953392.1|FK953392
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTSGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGT
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGT
EST: gi|71445140|gb|DR826190.1|DR826190
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252219|gb|FK953400.1|FK953400
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211156519|gb|FL164233.1|FL164233
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|33098530|gb|CF058490.1|CF058490
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211156514|gb|FL164228.1|FL164228
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211153314|gb|FL164202.1|FL164202
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252212|gb|FK953393.1|FK953393
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|74241051|gb|DT648965.1|DT648965
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|6952542|gb|AW424610.1|AW424610
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|148956338|gb|EC902144.2|EC902144
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|148931204|gb|EC873960.2|EC873960
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211264909|gb|FL208725.1|FL208725
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|148952476|gb|EC898302.2|EC898302
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGACGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211156522|gb|FL164236.1|FL164236
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGTAAAAG
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAG
EST: gi|211264914|gb|FL208730.1|FL208730
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|149076954|gb|EE165611.2|EE165611
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|78112697|gb|DV531091.1|DV531091
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252214|gb|FK953395.1|FK953395
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211154915|gb|FL164213.1|FL164213
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211149323|gb|FL312581.1|FL312581
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252217|gb|FK953398.1|FK953398
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|148987620|gb|EE031494.2|EE031494
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211154922|gb|FL164220.1|FL164220
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252215|gb|FK953396.1|FK953396
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|6194486|gb|AW146590.1|AW146590
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|33094853|gb|CF054847.1|CF054847
EST:     GTGCAAAAGATTCAGGCGCTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|32926059|gb|CF030871.1|CF030871
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|91875485|gb|EB405442.1|EB405442
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGAGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|71447361|gb|DR828411.1|DR828411
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211158115|gb|FL164244.1|FL164244
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|67024880|gb|CO453629.1|CO453629
EST:     CTAATATTGTACTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: CTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211252210|gb|FK953391.1|FK953391
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|32795340|gb|CD947576.1|CD947576
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211321302|gb|FL273340.1|FL273340
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211153313|gb|FL164201.1|FL164201
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC
EST: gi|211153309|gb|FL164197.1|FL164197
EST:     GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcactatcttttttgatcttgtattcatttaaattttctattttggaattggaatacattacaattgtgttgaagttcaatgttggttgttgttgaagttatggacctttagtgcatcttctcaattgtcaagttttttctatcacgttctattcatgcacttttcttgcattgttttcag

- - - - - - - - - - - - - - -  TTGGAG