1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGAAAGATTGTTGTCTTCGGAACAGAAGGCTACAGATTATCGAACACCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAGgtagttttctttctatctttaaaatttgccatgtcccaatataactaacttctgtttctcggttgttcag
species | Zea mays |
transcript | GRMZM5G823484_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAG AATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGAEST: gi|9566477|gb|BE475986.1|BE475986
genomic: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAGgtagttttct ... ggttgttcagAATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGA
EST: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAG AATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGAEST: gi|91878412|gb|EB408369.1|EB408369
genomic: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAGgtagttttct ... ggttgttcagAATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGA
EST: GCCAACTAATGCTTGTATAAG AATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGAEST: gi|32802642|gb|CD954878.1|CD954878
genomic: GCCAACTAATGCTTGTATAAGgtagttttct ... ggttgttcagAATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGA
EST: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTAGTATAAG AATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGAEST: gi|32804847|gb|CD957083.1|CD957083
genomic: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAGgtagttttct ... ggttgttcagAATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGA
EST: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAG AATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGAEST: gi|71434510|gb|DR815560.1|DR815560
genomic: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAGgtagttttct ... ggttgttcagAATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGA
EST: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAG AATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGAEST: gi|60396240|gb|DN229109.1|DN229109
genomic: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAGgtagttttct ... ggttgttcagAATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGA
EST: CCAGATGATGGAGCTGCACCAGATCATCAGCCAACTAATGCTTGTATAAG AATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGAEST: gi|5847426|gb|AW000505.1|AW000505
genomic: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAGgtagttttct ... ggttgttcagAATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGA
EST: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAG AATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGA
genomic: CCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAGgtagttttct ... ggttgttcagAATTGTAGCCTATCTCTCTCGTGTTCTTGAGGTTGCATTCAGTGCCCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAAAGATTGTTGTCTTCGGAACAGAAGGCTACAGATTATCGAACACCAGATGATGGAGCTGCACCAGATCATCGGCCAACTAATGCTTGTATAAGgtagttttctttctatctttaaaatttgccatgtcccaatataactaacttctgtttctcggttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA