Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGAGAACTGGAAAGCATTTATTCCTTACAGACAATGATGATGGTAGACGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAGgttatttagtgtacacttctcctttctatttgaaatgattgataaaatgtgtctgtatagaaatcaggtccttttattctttgtttaggctgtgtcaagtctaagtacagtatattattttatgcag

Basic information

species Zea mays
transcript GRMZM5G820727_T05
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G820727_T05 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 5'ss of exon 5
TTGGGAGAACTGGAAAGCATTTATTCCTTACAGACAATGATGATGGTAGACGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAGgttatttagtgtacacttc------tcctttctatttgaaatgattgataaaatgtgtctgtatagaaatcaggtccttttattctttgtttaggct-------------------------------gtgtcaagtctaagtacagtatattattttatgcag
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||| || | ||||||||||||  ||||   ||       || | | | ||| ||||| ||| | || |||   |||| |||||| | || | |||  | | ||||||   |                               || |||  ||| || ||| ||| || | ||||||||
TTGGGAGAACAGGAAAGCATTTATTCCTTACAGACAATGATGATGGCAGACGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAGgttattttctgtatgatttatgttgtcttatgtgtttaaaatggttggtgaa-tgtaaatgtacagaaatgaagttcattttctgtatgtttaccttcagtttcccaaagtagtccaaaaatgtttgggtatcatttctgagcacaatatgttctgttatgcag

upper sequence: GRMZM5G820727_T05 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G25620.1 (Glycine max), 5'ss of exon 6
TTGGGAGAACTGGAAAGCATTTATTCCTTACAGACAATGATGATGGTAGACGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAGgttatttagtgtacacttctcctttctatttgaaatgattgataaaatgtgtctgtatagaaatcaggtccttttattctttgtttaggctgtgtcaagtctaagtacagtatattattttatgcag
  |||||| |||| |||||| | ||||| |  |||||||||||||| |  || || || ||| | ||||||||| ||||||||||||||||| |||| | |    ||||| |  |  | ||  ||    |   |   | || ||  || ||| | | ||    |  |    | | ||| |||||   |   ||||                                
CAGGGAGATCTGGGAAGCATCTCTTCCTCATGGACAATGATGATGGAAAGCGTCCTCTGCTCGTGCGAATGGTTAATGACTCTGATGATTTAAAGTTTATg----ttagtattaaagtatcagttaagctc--atcaaatgctagtatttgtttttgtattgtt--gacaatctaattgtttgt---gatggtgtag------------------------------

upper sequence: GRMZM5G820727_T05 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA04G20400.2 (Glycine max), 5'ss of exon 5
TTGGGAGAACTGGAAAGCATTTATTCCTTACAGACAATGATGATGGTAGACGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAGgttatttagtgtacacttctcctttctatttgaaatgattgataaaatgtgtctgtatagaaatcaggtccttttattctttgtttaggctgtgtcaagtctaagtacagtatattattttatgcag
  |||||| |||| |||||| | ||||| |  |||||||||||||| |  || || || ||||| ||||||||| |||||||||| |||||| |||| | |    ||||| |  |  | ||  ||   ||    |  | || ||  || ||| | | ||  | | |     | | ||| |||||   | | ||||                                
CAGGGAGATCTGGGAAGCATCTCTTCCTCATGGACAATGATGATGGAAAGCGTCCTCTGCTCCTGCGAATGGTTAATGACTCTGACGATTTAAAGTTTATg----ttagtattaaagtatcagttaagttcatga--aatgctagtatttgtttctgtattattaaca--atctaattgtttgt---gacggtgtag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|108824145|gb|EC278153.1|EC278153
EST:     CGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAG                         ATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTT
genomic: CGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAGgttatttagt ... ttttatgcagATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTT