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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACCATAGAGTCTCAGTTGGGTTCTCGAATTTCTGATTTGTTTGCTGATATCAGCCCAGAGCCGATTGCAGCAGCATCACTGGGGCAGGTTTACAAAGgttagacatttctgataaggcttcgttactaacttgtgattatccttgttctgtactgattattatttaccttagcatatatttcagacctgagttctccaagttgaaatgcattcctttgatacttcaagtaatgcag

Basic information

species Zea mays
transcript GRMZM5G817551_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G817551_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g27480.1 (Oryza sativa), 5'ss of exon 5
AGGACCATAGAGTCTCAGTTGGGTTCTCGAATTTCTGATTTGTTTGCTGATATCAGCCCAGAGCCGATTGCAGCAGCATCACTGGGGCAGGTTTACAAAGgttagacatttctgataaggcttcgttactaacttgtgattatccttgttctgtactgattattatttaccttagcatatatttcagacctgagttctccaagttgaaatgcattcctttgatacttcaagtaatgcag
||||| || ||||||||  |||||||||||||||||||| | |||||||||||||||||||||||  |||| |||||||| |||||||| || || ||||||||| |||  |||| ||| | |  |  ||||   ||   |  |  | |||           |||    | | ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||
AGGACTATTGAGTCTCAACTGGGTTCTCGAATTTCTGATCTATTTGCTGATATCAGCCCAGAGCCAGTTGCTGCAGCATCGCTGGGGCAAGTATATAAAGgttagccatgcctgacaagacattttatctaatgagttggtggctatcttcc----------ttaagaccttaagcatctatttcagacctgagttctccaagttgaaatgcattc-tttgatatttcaagtcatgcag

upper sequence: GRMZM5G817551_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g27480.1 (Oryza sativa), 5'ss of exon 5
AGGACCATAGAGTCTCAGTTGGGTTCTCGAATTTCTGATTTGTTTGCTGATATCAGCCCAGAGCCGATTGCAGCAGCATCACTGGGGCAGGTTTACAAAGgttagacatttctgataaggcttcgttactaacttgtgattatccttgttctgtactgattattatttaccttagcatatatttcagacctgagttctccaagttgaaatgcattcctttgatacttcaagtaatgcag
||||| || ||||||||  |||||||||||||||||||| | |||||||||||||||||||||||  |||| |||||||| |||||||| || || ||||||||| |||  |||| ||| | |  |  ||||   ||   |  |  | |||           |||    | | ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||
AGGACTATTGAGTCTCAACTGGGTTCTCGAATTTCTGATCTATTTGCTGATATCAGCCCAGAGCCAGTTGCTGCAGCATCGCTGGGGCAAGTATATAAAGgttagccatgcctgacaagacattttatctaatgagttggtggctatcttcc----------ttaagaccttaagcatctatttcagacctgagttctccaagttgaaatgcattc-tttgatatttcaagtcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71314002|gb|DR793613.1|DR793613
EST:     TATCAGCCCAGAGCCGATTGCAGCAGCATCACTGGGGCAGGTTTACAAAG                         CTCATCTACGATCTGGAGAGCTTGTTGCAGTCAAAGTTCAAAGGCCTGGAA
genomic: TATCAGCCCAGAGCCGATTGCAGCAGCATCACTGGGGCAGGTTTACAAAGgttagacatt ... agtaatgcagCTCATCTACGATCTGGAGAGCTTGTTGCAGTCAAAGTTCAAAGGCCTGGAA
EST: gi|101388188|gb|EB816108.1|EB816108
EST:     TATCAGCCCAGAGCCGATTGCAGCAGCATCACTGGGGCAGGTTTACAAAG                         CTCATCTACGATCTGGAGAGCTTGTTGCAGTCAAAGTTCAAAGGCCTGGAA
genomic: TATCAGCCCAGAGCCGATTGCAGCAGCATCACTGGGGCAGGTTTACAAAGgttagacatt ... agtaatgcagCTCATCTACGATCTGGAGAGCTTGTTGCAGTCAAAGTTCAAAGGCCTGGAA