ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GAGAACCGGTTACAGTGCTCAGGGAACGGGATCTACTTTGATCATGCCAGTCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctggacatttctatatatatcttctgtgtgtttcttgcagttacatatgttatttaatggatctgttcaataaacaccaatttgaccaaatttgcattcacatatataagtgaacggtgactagaaataacgataatagcagatagcctaagaatctcttcactgtgtgcag

Basic information

species	Zea mays
transcript	GRMZM5G817037_T02
intron #	5
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM5G817037_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 5

GAGAACCGGTTACAGTGCTCAGGGAACGGGATCTACTTTGATCATGCCAGTCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaa-ccctggacatttctatatatatcttctg-tgtgtttcttgcagttacatatgttatttaatggatctgttcaataaacaccaatttgaccaaatttgcattcacatatataagtgaacggt-gactagaaataacgataatagcagatagcctaagaatctcttcactgtgtgcag
||| || || |||||||| |||||||| |||||| |||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||  || ||||  | ||| |  |||     | | |   |||   |||   ||    ||    |||| || | ||  ||||| |  ||        |  ||  ||| |||   | | ||   | || | |  | |  |||    ||    |||    ||     ||||||||| | |    ||  |||||
GAGGACTGGCTACAGTGCACAGGGAACAGGATCTGCTTTGATCATGCCAGTGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcactgaagttttactagtttgttacctggcatgtgcattatgattgatcatgtcatgtgatc-atctggttgat-----ttgacatg--caagtttatgtgc-cacccagaaataagtgctcaactgctgatttgaatagctccactagtcctaagaatatttctgatgcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|78118564|gb|DV536948.1|DV536948

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|211427863|gb|FL460787.1|FL460787

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|71433500|gb|DR814550.1|DR814550

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATTTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|71433501|gb|DR814551.1|DR814551

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|149105264|gb|EE290754.2|EE290754

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|32848620|gb|CD988301.1|CD988301

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|211291754|gb|FL244442.1|FL244442

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGAT
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGAT

EST: gi|50339217|gb|CO534343.1|CO534343

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAAAGGCCATCGATCTAATTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|148953910|gb|EC899291.2|EC899291

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|60397822|gb|DN230638.1|DN230638

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|211300324|gb|FL244509.1|FL244509

EST:     TCCTGGACA-TCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGNATCTAGTTAAGGA
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCG-ATCTAGTTAAGGA

EST: gi|211296047|gb|FL244481.1|FL244481

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCCCACCATTGTCGGAGTCAGAGGCCATCG
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCG

EST: gi|211287480|gb|FL244422.1|FL244422

EST:     TCCTGGACAATCAACTAAAATCACCAARTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|211427862|gb|FL460786.1|FL460786

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|31250194|gb|CD219218.1|CD219218

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|7009428|gb|AW455693.1|AW455693

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|33100971|gb|CF060931.1|CF060931

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|18174710|gb|BM350098.1|BM350098

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|32858194|gb|CD997875.1|CD997875

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|148965092|gb|EE015909.2|EE015909

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|31352578|gb|CD436935.1|CD436935

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|5456196|gb|AI833886.1|AI833886

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|149105265|gb|EE290755.2|EE290755

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|32859552|gb|CD999233.1|CD999233

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|148930814|gb|EC873185.2|EC873185

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|91868767|gb|EB400150.1|EB400150

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTCAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|37398186|gb|CF636403.1|CF636403

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|32858122|gb|CD997803.1|CD997803

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|71433723|gb|DR814773.1|DR814773

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|211291765|gb|FL244453.1|FL244453

EST:     GACAATCCACTAAAAATCACCAAGGTCCCTCTATTTACTCCCCTGTCAGG                         GAATGCTGGTCACACCATT
genomic: GACAATCAACTAAAA-TCACCAAG-TCC-TCTATT-ACTCCC-TGTCAGGgtaaaccctg ... ctgtgtgcagGA-TGCTG-TCACACCATT

EST: gi|148965093|gb|EE015910.2|EE015910

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         AATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|211298175|gb|FL244487.1|FL244487

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCA
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCA

EST: gi|6695570|gb|AW288678.1|AW288678

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|31351401|gb|CD435758.1|CD435758

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

EST: gi|211289614|gb|FL244427.1|FL244427

EST:     CCTGGACAATNCA-CTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTA
genomic: CCTGGACAAT-CAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTA

EST: gi|31356308|gb|CD440665.1|CD440665

EST:     TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGG                         GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC
genomic: TCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGAC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 635

GAGAACCGGTTACAGTGCTCAGGGAACGGGATCTACTTTGATCATGCCAGTCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaaccctg ... ctgtgtgcagGATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGACGTGTTCGCATCTGCAACTGAGAGAGACATCTACACT

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 754

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 561