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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATCATTTATTGCAACACCAGTACAATTTGATGAAATATCCAGCACCTCCGAATATTCCATTGGCTCCAATACAAAATGGAATTCATCATATGCCAGgtaatgtccctgtttataagtctatcttggaaagatgtctaagttaataggcttctatttaggatttgcatttttatgttttccttagttttgatgtact...

Basic information

species Zea mays
transcript GRMZM5G816784_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G816784_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g12080.1 (Oryza sativa), 5'ss of exon 5
TTCAATCATTTATTGCAACACCAGTACAATTTGATGAAATATCCAGCACCTCCGAATATTCCATTGGCTCCAATACAAAATGGAATTCATCATATGCCAGgtaatgtccctgtttataagtctat-cttggaaagatgt--ctaagt-taataggcttctatttaggatttgcatttttatgttttccttagttttgatgtact
||||| |||||| |||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| || ||||| ||||| |||| |||||||||||| |||| || ||| |||||||  | ||||||| |||  ||  || || |||  |||  | ||   |||  | | || |||||   ||  ||| | |||   
TTCAACCATTTACTGCAGCACCAATACAATTTGATGAAATATCCAGCACCTCCAAATGTTCCATTGGCTCCTATGCAAAACGGAATGCATCCTATGCCAGgtaaagtccatgcttacaagtctaggcctggaaagttgttactctgtctagtagatttcagtctaaagtttcaaatattctgtttatattgctttcg-tgt---

upper sequence: GRMZM5G816784_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G06230.1 (Glycine max), 5'ss of exon 6
TTCAATCATTTATTGCAACACCAGTACAATTTGATGAAATATCCAGCACCTCCGAATATTCCATTGGCTCCAATACAAAATGGAATTCATCATA-TGCCAGgtaatgtccctgtttataagtctatcttggaaagatgtctaagttaataggcttctatttaggatttgcatttttatgttttccttagttttga-tgtact---
 ||||||||||| |  | || |||||  || | ||||| | ||||   ||| | ||  ||||||||||||||||||| |||||||| ||||  | |||| |||||  | | ||        ||  ||      | |||  |  ||   |  |  ||        |||  | | |||    ||| | |   ||  | |  |||   
-TCAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGcaaaggttccattggctccaatacagaatggaatccatcccaatgcctggtaa-attcttgccctctcatcagtc---agcatatgagtgtgtgtgtttgaatccgaaatatattcacgtctttgcaatttgcatgacttaaagtaaactatg

upper sequence: GRMZM5G816784_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G02860.2 (Glycine max), 5'ss of exon 5
TTCAATCATTTATTGCAACACCAGTACAATTTGATGAAATATCCAGCACCTCCGAATATTCCATTGGCTCCAATACAAAATGGAATTCATCATATGCCAGgtaatgtc---cctgtttataagtctatcttggaaagatgtctaagtt---aataggctt--ctatttaggatttgcat--ttttatgttttccttagttttgatgtact
|||||||||||| |  | || |||||  || ||||||| | ||||   ||| | ||  ||||||||||||||||||| |||||||| ||||  ||||| |||||  ||   ||   | || ||| | | |  |   | ||| ||| |    ||||   |   || |||   |||||||    || | ||   |  |   ||         
TTCAATCATTTACTTGAGCATCAGTATCATCTGATGAAGTGTCCAATGCCTGcaaaggttccattggctccaatacagaatggaatccatccaatgcctggtaaattcttgccctctcatcagtgtgtatatgtgtg-tgtttaaatccaaaatatcttcacctctttgcaatttgcacgacttaaagtaaactgtgagtt---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74236845|gb|DT644759.1|DT644759
EST:     TCCGAATATTCCATTGGCTCCAATACAAAATGGAATTCATCATATGCCAG                         TTAGCAATTTACCAATGGGGTATCCAGTACTTCAGCAGCCTATCATGCCTG
genomic: TCCGAATATTCCATTGGCTCCAATACAAAATGGAATTCATCATATGCCAGgtaatgtccc ... tccagtgcagTTAGCAATTTACCAATGGGGTATCCAGTACTTCAGCAGCCTATCATGCCTG