Sequence
atgc intronic sequence ATGC exonic sequenceCCTACTGCACTGGCCTTCTGTTGGCTCGCCGTGTGCTCAAGACCCGTGGTTTAGATAAGGAATATGAGGGCAATGTTGAGgtaaaatttggctaaatttcgatcttattttttgctgatgtcacattggttgggcatttatattgtttcttttcgttcatcaggccactggtgaggactt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G815894_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g67134.1 (Oryza sativa), 5'ss of exon 5
CCTACTGCACTGGCCTTCTGTTGGCTCGCCGTGTGCTCAAGACCCGTGGTTTAGATAAGGAATATGAGGGCAATGTTGAGgtaaaatttggctaaatttcgatcttat----tttttgctgatg-tcacattggttgggcatttatattgtttcttttcgttcatcaggccactggtgaggactt
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CTTATTGCACTGGCTTGCTTTTGGCTCGCCGTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGgtacaaatacaatccttataaattttttactctatatgctcatgctcatgctgattttgatcttgatatgtatgattcctttggttag-----------------
upper sequence: GRMZM5G815894_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g67126.1 (Oryza sativa), 5'ss of exon 5
CCTACTGCACTGGCCTTCTGTTGGCTCGCCGTGTGCTCAAGACCCGTGGTTTAGATAAGGAATATGAGGGCAATGTTGAGgta-aaatttggctaaatttcgatcttattttttgctgatgtcacattggttgggcatttatattgtttcttttcgttcatcaggccactggtgaggactt
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CTTACTGCACTGGCTTGCTTCTGGCTCGTCGTGTGCTCACGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATGTTGAGgtacaaatataatcc--ttataatttttttactctatatgctcatgctggtcttgatcttgatatgtatgattcctttggtcag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32939398|gb|CF044217.1|CF044217EST: GTGTGCTCAAGACCCGTGGTTTAGATAAGGAATATGAGGGCAATGTTGAG GCCAGTCTCATTGAAAGGCTCAACCAACTCAACTCCTCGGGCGGC
genomic: GTGTGCTCAAGACCCGTGGTTTAGATAAGGAATATGAGGGCAATGTTGAGgtaaaatttg ... gcagaggaagGCCAGTCTCATTGAAAGGCTCAACCAACTCAACTCCTCGGGCGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTACTGCACTGGCCTTCTGTTGGCTCGCCGTGTGCTCAAGACCCGTGGTTTAGATAAGGAATATGAGGGCAATGTTGAGgtaaaatttggctaaatttcgatcttattttttgctgatgtcacattggttgggcatttatattgtttcttttcgttcatcaggccactggtgaggactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA