ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttacattcctactttgcatcttcttgcatactttataaagataaattacacctcaaaacatttagtcttcctctgccagacaagtgcagtaagtt...

Basic information

species	Zea mays
transcript	GRMZM5G815009_T02
intron #	5
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM5G815009_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g59440.1 (Oryza sativa), 5'ss of exon 5

CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttacattcctactttgcatcttcttgcatactttataaagataaattacacctcaaaacatttagtcttcctctgccagacaagtgcagtaagtt-----
 |||||||||||||||||| | ||||| || ||||| ||||| |||||||||||||||||||| || ||||||||||||  | | |   | || ||  | ||  ||  ||| |  ||    |||| |      | |||||  | ||    | | | || | ||  |||         
TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttgactgcctttgtg-atactatt--atgatttcttcagcagtattaaagtcattatcattttatattaaatttcaaaactaatg--gtagcccaaaac

upper sequence: GRMZM5G815009_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 5

CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttac-----attcctactttgcatcttcttgcatactttataaagataaattacacctcaaaacatttagtctt-cctctgccagacaagtgcagtaagtt
 ||||| || | ||||||||||||||| || ||||| |||||||| ||||| ||||| |||||  |||  |||||| ||       | ||  |   || | |||  | | || | |  |         ||  | |       |||  ||    || | |    |   ||||       
GGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAAgtaatttcttcttaactctaagcatgtagctttcttcttattctccatgtg-gtgctattcatgttggtttttgctcgagtcttttcttctcttctgcacc-----

upper sequence: GRMZM5G815009_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv06s0009g01210.t01 (Vitis vinifera), 5'ss of exon 5

CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttacattcctactttgcatcttcttgcatactttataaagataaattacacctcaaaacatttagtcttcctctgccagacaagtgcagtaagtt-------------
 ||||||||||||||  | |||||||| || ||||| ||| | ||||| ||||||||||||||  ||| |||||| |       | || |||  |||||  | | |||||||| ||  || ||  |  || | |||  ||   ||  || ||    ||| |   ||||   |             
TGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTTTGAGCACATTCCATTGAACAAgtatgc------cttaattt--atctttcttc-tactttatgaat-tatatggcttctgataactcttgaactagctatg---aacatggatagtataatccatgggttttca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|93283939|gb|EB676203.1|EB676203

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|78117751|gb|DV536138.1|DV536138

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|89754453|gb|DY685228.1|DY685228

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTTTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|120481015|gb|EH211119.1|EH211119

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|74240378|gb|DT648292.1|DT648292

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAAAACCCACGCTTG
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTG

EST: gi|149101777|gb|EE187896.2|EE187896

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|149001445|gb|EE038745.2|EE038745

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|78081972|gb|DV510384.1|DV510384

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTCCAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|71307337|gb|DR789855.1|DR789855

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|71421340|gb|DR805385.1|DR805385

EST:     TGTGGGACGATTCCCACTTCTGGACCATTTGAGCACATTCTTTTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|91052481|gb|EB162899.1|EB162899

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGAAAGGTCCAGAGCTACAAGGCCCTG-CCA
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCC-TGGCCA

EST: gi|89252147|gb|DY623933.1|DY623933

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|113647143|gb|DW804467.1|DW804467

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCC
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCC

EST: gi|71428581|gb|DR809631.1|DR809631

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|76013570|gb|DT940740.1|DT940740

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|93282736|gb|EB675000.1|EB675000

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|148933094|gb|EC876726.2|EC876726

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTTTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|211108196|gb|FL028202.1|FL028202

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|26456451|gb|CA828034.1|CA828034

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|149104283|gb|EE289721.2|EE289721

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|60394303|gb|DN227173.1|DN227173

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|71307336|gb|DR789854.1|DR789854

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTTTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|38688023|gb|CK145054.1|CK145054

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|74241262|gb|DT649176.1|DT649176

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|38688024|gb|CK145055.1|CK145055

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|211290374|gb|FL395526.1|FL395526

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGARCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|74241261|gb|DT649175.1|DT649175

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|91054725|gb|EB165143.1|EB165143

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|30087585|gb|CB885791.1|CB885791

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCATAAGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|71433639|gb|DR814689.1|DR814689

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|71421341|gb|DR805386.1|DR805386

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|91051610|gb|EB162028.1|EB162028

EST:     TGTGGGGCGATTCCCACATCTGGACCATTTGAGCACATTCCTTTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|38688040|gb|CK145071.1|CK145071

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|71450092|gb|DR831142.1|DR831142

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|9254574|gb|BE345042.1|BE345042

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|149076486|gb|EE165112.2|EE165112

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTTTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|149076487|gb|EE165113.2|EE165113

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGAAAGGTCCAGAGCTACAGGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|78545153|gb|DV622651.1|DV622651

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|33468041|gb|CF245090.1|CF245090

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|78117159|gb|DV535546.1|DV535546

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|89246857|gb|DY618644.1|DY618644

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTTTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|71422474|gb|DR805742.1|DR805742

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|9254719|gb|BE345187.1|BE345187

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|15053648|gb|BI359193.1|BI359193

EST:     GGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: GGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|149110630|gb|EE190518.2|EE190518

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|76013569|gb|DT940739.1|DT940739

EST:     TGTGGGACGATTCCCACTTCTGGACCATTTGAGCACATTCCTTTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|38688041|gb|CK145072.1|CK145072

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|78081973|gb|DV510385.1|DV510385

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|213191015|gb|FM195385.1|FM195385

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|50336223|gb|CO531349.1|CO531349

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|45847524|gb|CN071467.1|CN071467

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|71428580|gb|DR809630.1|DR809630

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

EST: gi|78117158|gb|DV535545.1|DV535545

EST:     TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA                         CTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 776

CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCATATATGACACCAACTGCTAGAGGGGGCACCACGAACAAAAGAATCGCTAG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 575

CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCATATATGACACCAACTGCTAGAGGGGGCACCACGAACAAAAGAATCGCTAG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 681

CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCATATATGACACCAACTGCTAGAGGGGGCACCACGAACAAAAGAATCGCTAG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 816

CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttaca ... acccctgcagCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCATATATGACACCAACTGCTAGAGGGGGCACCACGAACAAAAGAATCGCTAG

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttacattcctactttgcatcttcttgcatactttataaagataaattacacctcaaaacatttagtcttcctctgccagacaagtgcagtaagtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctctgcc

Data associated with selected splice site

Sequence

Basic information

Orthologous splice sites

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

RNA-Seq data

Putative cis-regulatory sequences