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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCGgtatgttctcacacttcattcagacttgtaacttgatacaaaatcactatcctatgttgagttaacaaggattttatactcttcaatag

Basic information

species Zea mays
transcript GRMZM5G813363_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G813363_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g10740.1 (Oryza sativa), 5'ss of exon 5
TTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCGgtatgttctcacacttcattcagacttgtaacttgatacaaaatcactatcctatgttgagttaacaaggattttatactcttcaatag------
 |||||||||||||||||||| ||||| || |||||||| ||||| |||||||| ||||| ||  ||        ||| |  | | |   || |    | ||||||    || ||   || | |||  |  || ||    |  ||||| |      
ATTAGGATCTGTGATGTGCCTGGGTGTTACAGCTGGTGCCTATGTCCTCACTCTGTTTGCAgtgagtg-------ttcctgtacattgtgaattcaggagaaaatcttactcttagactgtgctaatgacaatcttcattttctcaattgtcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74238192|gb|DT646106.1|DT646106
EST:     TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCG                         ACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGC
genomic: TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCGgtatgttctc ... tcttcaatagACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGC
EST: gi|101387839|gb|EB815934.1|EB815934
EST:     TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCG                         ACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGC
genomic: TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCGgtatgttctc ... tcttcaatagACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGC
EST: gi|101391594|gb|EB817733.1|EB817733
EST:     TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCG                         ACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGGTTCCCCTCTGTGC
genomic: TGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCGgtatgttctc ... tcttcaatagACGAAATACCGGGAGAGGGTAATAGGATTGATGCTGGTTTCCCCTCTGTGC