Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCAATGGTTTCTTTTGGGAAGGAAGTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactcctattccctgccctttaagcttttagtttggacgtttgaactttgaactataagaatgatctcaattgtttcttctacatgacttgttctctgacag

Basic information

species Zea mays
transcript GRMZM5G812553_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075654|gb|DV504088.1|DV504088
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|40334416|gb|CK368486.1|CK368486
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|50336722|gb|CO531848.1|CO531848
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|71764065|gb|DR962002.1|DR962002
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|211467175|gb|FK976084.1|FK976084
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTG
EST: gi|91878207|gb|EB408164.1|EB408164
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|76285904|gb|DV025472.1|DV025472
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|89759547|gb|DY688342.1|DY688342
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|30307231|gb|CD001904.1|CD001904
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|149080870|gb|EE169951.2|EE169951
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|93281461|gb|EB673725.1|EB673725
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|76021472|gb|DT948642.1|DT948642
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|27522138|gb|CA989244.1|CA989244
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|148976019|gb|EE025878.2|EE025878
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|50322460|gb|CO517586.1|CO517586
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|30087318|gb|CB885526.1|CB885526
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACAT
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACAT
EST: gi|50334433|gb|CO529559.1|CO529559
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|71774560|gb|DR972438.1|DR972438
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCTTTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|91051589|gb|EB162007.1|EB162007
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|78085115|gb|DV513508.1|DV513508
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|78078210|gb|DV506625.1|DV506625
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|91878508|gb|EB408465.1|EB408465
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCCACGGCGCTGGGT                         CTCCATTCCCACTTGGAACTGGCTCAGATTTTGCTCCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTC-ATTCC-ACTTGGAACTGGCTCAGATTTTGCTC-GGACATTTGGCTG
EST: gi|78105462|gb|DV523880.1|DV523880
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|71436209|gb|DR817259.1|DR817259
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|67022745|gb|CO451494.1|CO451494
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|78121934|gb|DV540318.1|DV540318
EST:     ATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: ATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|91050474|gb|EB160892.1|EB160892
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGG
EST: gi|78113487|gb|DV531878.1|DV531878
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|33467744|gb|CF244793.1|CF244793
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGG-CTG
EST: gi|211469689|gb|FK976086.1|FK976086
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|40335239|gb|CK369309.1|CK369309
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|78121935|gb|DV540319.1|DV540319
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|71298751|gb|DR785364.1|DR785364
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|31363680|gb|CD448037.1|CD448037
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|8102673|gb|AW927320.1|AW927320
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|71436272|gb|DR817322.1|DR817322
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|30087080|gb|CB885288.1|CB885288
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
EST: gi|31406361|gb|CD485093.1|CD485093
EST:     GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGT                         CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG
genomic: GTCCAGTGTGTGCTCTGGATCGAGGGCCTGATCATTCGACGGCGCTGGGTgtgggtactc ... tctctgacagCTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTG