1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGAACAGTGAGTGGGCTGTATGGCAAATAGATGTCCTGATCAAACGCAATGAGGTGGAGAATGTTTACCATTGGGCATGTGGgtatgttcttccattctgggttctctgattattgtctacactgctgaaacacttgtcatttgtctgtggtaaattttatatttcttcctgactgttggctaatgttttatgctgcag
species | Zea mays |
transcript | GRMZM5G812498_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCCTGATCAAACGCAATGAGGTGGAGAATGTTTACCATTGGGCATGTGG CCGTCCAACATCTCTACATGATCGTGGGAGGGATAGCGATGACGACGACTTEST: gi|13388459|gb|BG462175.1|BG462175
genomic: GTCCTGATCAAACGCAATGAGGTGGAGAATGTTTACCATTGGGCATGTGGgtatgttctt ... tatgctgcagCCGTCCAACATCTCTACATGATCGTGGGAGGGATAGCGATGACGACGACTT
EST: GTCCTGATCAAACGCAATGAGGTGGAGAATGTTTACCATTGGGCATGTGG CCGTCCAACATCTCTACATGATCGTGGGAGGGATAGCGATGACGACEST: gi|78110602|gb|DV529010.1|DV529010
genomic: GTCCTGATCAAACGCAATGAGGTGGAGAATGTTTACCATTGGGCATGTGGgtatgttctt ... tatgctgcagCCGTCCAACATCTCTACATGATCGTGGGAGGGATAGCGATGACGAC
EST: GTCCTGATCAAACGCAATGAGGTGGAGAATGTTTACCATTGGGCATGTGG CCGTCCAACATCTCTACATGATCGTGGGAGGGATAGCGATGACGACGACTTEST: gi|60399315|gb|DN232129.1|DN232129
genomic: GTCCTGATCAAACGCAATGAGGTGGAGAATGTTTACCATTGGGCATGTGGgtatgttctt ... tatgctgcagCCGTCCAACATCTCTACATGATCGTGGGAGGGATAGCGATGACGACGACTT
EST: GTCCTGATCAAACGCAATGAGGTGGAGAATGTTTACCATTGGGCATGTGG CCGTCCAACATCTCTACATGATCGTGGGAGGGATAGCGATGACGACGACTT
genomic: GTCCTGATCAAACGCAATGAGGTGGAGAATGTTTACCATTGGGCATGTGGgtatgttctt ... tatgctgcagCCGTCCAACATCTCTACATGATCGTGGGAGGGATAGCGATGACGACGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAACAGTGAGTGGGCTGTATGGCAAATAGATGTCCTGATCAAACGCAATGAGGTGGAGAATGTTTACCATTGGGCATGTGGgtatgttcttccattctgggttctctgattattgtctacactgctgaaacacttgtcatttgtctgtggtaaattttatatttcttcctgactgttggctaatgttttatgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA