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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGGgtatacttcttcattatgttactagcttaccttccttgaactcctctaactagcttgatgggtaatatccag

Basic information

species Zea mays
transcript GRMZM5G807767_T03
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211020790|gb|FL433478.1|FL433478
EST:     AAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGG                         GACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
genomic: AAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGGgtatacttct ... taatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
EST: gi|149101095|gb|EE187199.2|EE187199
EST:     AAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGG                         GACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
genomic: AAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGGgtatacttct ... taatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
EST: gi|13557817|gb|BG549173.1|BG549173
EST:     AATGTTAAAACATTCATGAACGAGCAATTGACTTTTGGCAAAAGCATTGG                         GACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
genomic: AATGTTAAAACA-CCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGGgtatacttct ... taatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
EST: gi|149029834|gb|EE286274.2|EE286274
EST:     AAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGG                         GACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
genomic: AAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGGgtatacttct ... taatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
EST: gi|211112500|gb|FL459337.1|FL459337
EST:     AACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGG                         GACAAACCAATTCCTCTAAAGYTGAAACGCCTTGCACGTGACCATGAGAGA
genomic: AACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGGgtatacttct ... taatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA