1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCGCCAGAGACTTGGATGATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAAgtatgtgtattttcctacttgtgtctatgagctggttgcatactggcatcaaactcatccattgtacatacacacttatttcatgattcag
species | Zea mays |
transcript | GRMZM5G806309_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTGGCTAAGAGAATATCACTGGGAA GTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGATEST: gi|18963864|gb|BM660673.1|BM660673
genomic: CCTGGCTAAGAGAATATCACTGGGAAgtatgtgtat ... catgattcagGTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGAT
EST: CCTGGCTAAGAGAATATCACTGGGAA GTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGATEST: gi|5928962|gb|AW056254.1|AW056254
genomic: CCTGGCTAAGAGAATATCACTGGGAAgtatgtgtat ... catgattcagGTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGAT
EST: ATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAA GTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGATEST: gi|67015187|gb|CO443936.1|CO443936
genomic: ATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAAgtatgtgtat ... catgattcagGTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGAT
EST: ATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAA GTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGATEST: gi|76286234|gb|DV025802.1|DV025802
genomic: ATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAAgtatgtgtat ... catgattcagGTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGAT
EST: ATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAA GTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGATEST: gi|18964396|gb|BM660982.1|BM660982
genomic: ATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAAgtatgtgtat ... catgattcagGTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGAT
EST: CCTGGCTAAGAGAATATCNCTGGGAA GTGAGAGGAGATGATAAAGATGATCCTCCAACATACCTTGTCACATTTGATEST: gi|71765228|gb|DR963165.1|DR963165
genomic: CCTGGCTAAGAGAATATCACTGGGAAgtatgtgtat ... catgattcagGTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGAT
EST: ATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAA GTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGATEST: gi|71765227|gb|DR963164.1|DR963164
genomic: ATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAAgtatgtgtat ... catgattcagGTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGAT
EST: ATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAA GTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGAT
genomic: ATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAAgtatgtgtat ... catgattcagGTGAGAGGAGATGATAAAGATGATCCTACAACATACCTTGTCACATTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGCCAGAGACTTGGATGATGAAAACGATGATATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAAgtatgtgtattttcctacttgtgtctatgagctggttgcatactggcatcaaactcatccattgtacatacacacttatttcatgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA