1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACTTGTAACTGAGCTAGCAGATGTTGGCCGAAAACGGGAAGCAGTGTTAGCTACATTTCTGCCCGAGGAGCATGGAAGCTTCAAAAAATTCACAGAATTGgtatttctgtatgggattattctgccaacacataagtttaaaatccatttcctgtgttatgacttctggttctgcag
species | Zea mays |
transcript | GRMZM2G569855_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTACATTTCTGCCCGAGGAGCATGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCAEST: gi|211300922|gb|FL387922.1|FL387922
genomic: CTACATTTCTGCCCGAGGAGCATGGAAGCTTCAAAAAATTCACAGAATTGgtatttctgt ... ggttctgcagGTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCA
EST: ACATTTCTGCCCGAGGAGCACGGNAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCAEST: gi|211054449|gb|FL405163.1|FL405163
genomic: ACATTTCTGCCCGAGGAGCATGG-AAGCTTCAAAAAATTCACAGAATTGgtatttctgt ... ggttctgcagGTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCA
EST: ACATTTCTGCCCGAGGAGCACGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCAEST: gi|211179727|gb|FL382076.1|FL382076
genomic: ACATTTCTGCCCGAGGAGCATGGAAGCTTCAAAAAATTCACAGAATTGgtatttctgt ... ggttctgcagGTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCA
EST: ACATTTCTGCCCGAGGAGCACGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCAEST: gi|32945328|gb|CF050147.1|CF050147
genomic: ACATTTCTGCCCGAGGAGCATGGAAGCTTCAAAAAATTCACAGAATTGgtatttctgt ... ggttctgcagGTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCA
EST: CTACATTTCTGCCCGAGGAGCACGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCAEST: gi|33942479|gb|CF349079.1|CF349079
genomic: CTACATTTCTGCCCGAGGAGCATGGAAGCTTCAAAAAATTCACAGAATTGgtatttctgt ... ggttctgcagGTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCA
EST: CTACATTTCTGCCCGAGGAGCACGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCA
genomic: CTACATTTCTGCCCGAGGAGCATGGAAGCTTCAAAAAATTCACAGAATTGgtatttctgt ... ggttctgcagGTTGGCAGGATGAATATTACTGAATTTAAATACAGATATGATTTTAATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGTAACTGAGCTAGCAGATGTTGGCCGAAAACGGGAAGCAGTGTTAGCTACATTTCTGCCCGAGGAGCATGGAAGCTTCAAAAAATTCACAGAATTGgtatttctgtatgggattattctgccaacacataagtttaaaatccatttcctgtgttatgacttctggttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG