ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

AAGAGAGAGGACACTGGCAGGATTTCGGGATGGGCGGTTTAATATATTGATTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgcttccccttctctaagctatctccattattttttgttgcaatcaccatgtgcatcatctgttgtgtaccctcatgcggttctccttgttcag

Basic information

species	Zea mays
transcript	GRMZM2G565140_T01
intron #	5
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G565140_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g41715.1 (Oryza sativa), 5'ss of exon 5

AAGAGAGAGGACACTGGCAGGATTTCGGGATGGGCGGTTTAATATATTGATTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgcttcccct--tctctaagctatctccattatttttt--gttgcaatcaccatgtgcatcatctgttg-tgtaccctcatgcggttctccttgttcag----------------------------------------------------------
||||||||| ||| |   |||||| || || || |  |||||||| |||||||| |||||||| ||| ||||||| ||||||||||||||||||||  ||||| ||| || || |  |   |  ||| |    ||| | | |    | ||  |  | | ||   |  ||| | | |||    |     | || |  ||    |                                                           
AAGAGAGAGAACATTAAAAGGATTCCGTGAAGGCCATTTTAATATTTTGATTGCCACTGATGTTGCTGCTCGTGGTTTGGATATCCCAAATGTAGACTTGgttagtgttttccttgattattctgctcttctaattttgtatgaaatagctgtttctaggttggttttctttcgctgtgttttaggttgtttttttttaaataaaaatagcaactacactttgtgttgaacagtgcttgagtgacttcccttccttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|32842833|gb|CD982514.1|CD982514

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842842|gb|CD982523.1|CD982523

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842824|gb|CD982505.1|CD982505

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATCTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842589|gb|CD982270.1|CD982270

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842460|gb|CD982141.1|CD982141

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCCAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842456|gb|CD982137.1|CD982137

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842583|gb|CD982264.1|CD982264

EST:     TTGCTCCTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842809|gb|CD982490.1|CD982490

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842651|gb|CD982332.1|CD982332

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842391|gb|CD982072.1|CD982072

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCC-AAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842806|gb|CD982487.1|CD982487

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842737|gb|CD982418.1|CD982418

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|22543120|gb|BU093558.1|BU093558

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842485|gb|CD982166.1|CD982166

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842761|gb|CD982442.1|CD982442

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842566|gb|CD982247.1|CD982247

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842771|gb|CD982452.1|CD982452

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842765|gb|CD982446.1|CD982446

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842619|gb|CD982300.1|CD982300

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842579|gb|CD982260.1|CD982260

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842750|gb|CD982431.1|CD982431

EST:     TTGCTCCTGCTGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842646|gb|CD982327.1|CD982327

EST:     TTGCTCCTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32841848|gb|CD981529.1|CD981529

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

EST: gi|32842834|gb|CD982515.1|CD982515

EST:     TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTG                         GTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT
genomic: TTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 122

AAGAGAGAGGACACTGGCAGGATTTCGGGATGGGCGGTTTAATATATTGATTGCTACTGATGTCGCTTCTCGTGGATTGGATATCCCAAATGTAGATCTGgtttgtgctt ... ccttgttcagGTGATACATTTCGAATTGCCAAATTCGTCAGAGATATTCGTTCACAGATCTGGCCGAACTGGCCGTGCTGGGAAGAAGGGCACTGCAATTGTGATGTACA

Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 66

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 49