1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttccttgctactgtcttgtttgtttcattcctctatcattttgctgcttatgttaaatatatatacgacttccatccattcttacaaaaaagtgaattatatgttcag
species | Zea mays |
transcript | GRMZM2G553314_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATEST: gi|22819104|gb|BU499194.1|BU499194
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAAT
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGEST: gi|26457084|gb|CA828667.1|CA828667
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGEST: gi|87153201|gb|DY397990.1|DY397990
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGEST: gi|20507213|gb|BQ279533.1|BQ279533
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGEST: gi|26559163|gb|CA831398.1|CA831398
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGEST: gi|87157710|gb|DY402499.1|DY402499
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGEST: gi|22542059|gb|BU092497.1|BU092497
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGEST: gi|32933378|gb|CF038190.1|CF038190
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGEST: gi|50334514|gb|CO529640.1|CO529640
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGEST: gi|19058529|gb|BM737196.1|BM737196
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
EST: GGTCAGCAGGGCAGAAGCTCTTGAAATGTTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTTGAGGACAAGACCATTACTGTATACAGEST: gi|78092217|gb|DV520591.1|DV520591
genomic: GGTCAGCAGGGCAGAAGCTCTTGAAATG-TTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCC-TGAGGACAAGACCATTACTGTATACAG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGANGACAAGACCATTACTGTATACAGEST: gi|211165966|gb|FL031946.1|FL031946
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGGEST: gi|22490568|gb|BU050491.1|BU050491
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
EST: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG GTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
genomic: AGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttcc ... atatgttcagGTTGAAATCATTAATGAGTTGCCTGAGGACAAGACCATTACTGTATACAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAGgcaaccttccttgctactgtcttgtttgtttcattcctctatcattttgctgcttatgttaaatatatatacgacttccatccattcttacaaaaaagtgaattatatgttcag
- - - - - - - - - - - - - - - - - - - AGAAGC