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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGgtccttttctttccttctgtatccagtaatcggtaccataatatgagcagtaccttccttagttgctacaatagtatgattctaataattgtcaagttgtttttcttttatcctgttgaaggaacactgacgcataacattttgctgcag

Basic information

species Zea mays
transcript GRMZM2G495626_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G495626_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g67160.1 (Oryza sativa), 5'ss of exon 5
CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGgtccttttcttt----ccttctgtatccagtaatcggtac------cataatatgagcagtaccttccttagttgctacaatagtatgattctaataattgtcaagttgtttttcttttatcctgttgaaggaacactgacgcataacattttgctgcag
||||||||| | || | || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| || |   |    ||||   |    || ||   || |      |||||||||||   ||| || ||||  |||||  | |  ||| || ||||||||    |                                                       
CTGAAATGGTCAGAAGACAAGCTCTTTTTCCAGGTGACTCTGAGTTGCAACAGTTGCTTCACATTTTCAGgtctttcttccttctgcctttcatgattagcaagaagtgcagttatcataatatgagt--tacattgcttatctgctaagaca--atggtt-taataatttgata-------------------------------------------------------