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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTCCTtttctttccttctgtatccagtaatcggtaccataatatgagcagtaccttccttagttgctacaatagtatgattctaataattgtcaagttgtttttc...

Basic information

species Zea mays
transcript GRMZM2G495626_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G495626_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g67160.1 (Oryza sativa), 5'ss of exon 5
CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTCCTtttcttt----ccttctgtatccagtaatcggtac------cataatatgagcagtaccttccttagttgctacaatagtatgattctaataattgtcaagttgtttttc
||||||||| | || | || ||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| || |   |    ||||   |    || ||   || |      |||||||||||   ||| || ||||  |||||  | |  ||| || ||||||||    |          
CTGAAATGGTCAGAAGACAAGCTCTTTTTCCAGGTGACTCTGAGTTGCAACAGTTGCTTCACATTTTCAGgtctttcttccttctgcctttcatgattagcaagaagtgcagttatcataatatgagt--tacattgcttatctgctaagaca--atggtt-taataatttgata----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71431608|gb|DR812658.1|DR812658
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGCT                         -GGGAACACCTACTGAGGAACAGTGGCCTGGAGTGATTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTC-CTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|213167909|gb|FM191321.1|FM191321
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGCT                         -GGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTC-CTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|30306650|gb|CD001323.1|CD001323
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|71450236|gb|DR831286.1|DR831286
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGCT                         -GGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTC-CTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|88755349|gb|DY539490.1|DY539490
EST:     TTTCTTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|87155782|gb|DY400571.1|DY400571
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|76294289|gb|DV033857.1|DV033857
EST:     TTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTTAGGTTGGCT                         -GGGAACACCTACTGAAGAACAGTGGGCCTGGAGT
genomic: TTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTC--CTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGG-CCTGGAGT
EST: gi|50328765|gb|CO523891.1|CO523891
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|5005601|gb|AI711663.1|AI711663
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|74238746|gb|DT646660.1|DT646660
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGAAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|211362664|gb|FL128442.1|FL128442
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGCT                         -GGGAACACCTACTGAGGAACA
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTC-CTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACA
EST: gi|29947506|gb|CB816691.1|CB816691
EST:     TTTCCTGG-GACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAG-GGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|18178648|gb|BM379858.1|BM379858
EST:     AGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: AGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|31558281|gb|CD527493.1|CD527493
EST:     GACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAG-GGCCTGGAGTGAGTGATTTAAGGGAC
genomic: GACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|110195341|gb|EC877238.1|EC877238
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|76289583|gb|DV029151.1|DV029151
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGCT                         -GGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGG
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTC-CTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGG
EST: gi|50336412|gb|CO531538.1|CO531538
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|9254753|gb|BE345221.1|BE345221
EST:     CCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: CCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|60343112|gb|DN210085.1|DN210085
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|5081226|gb|AI738383.1|AI738383
EST:     TGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|78027249|gb|DV495636.1|DV495636
EST:     GGTGACTTGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: GGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|76908586|gb|DV163013.1|DV163013
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|211301653|gb|FL434049.1|FL434049
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|91878647|gb|EB408604.1|EB408604
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|149110995|gb|EE294494.2|EE294494
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGCT                         -GGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTC-CTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|29577107|gb|CB617219.1|CB617219
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|71313275|gb|DR793171.1|DR793171
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGCT                         -GGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTC-CTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|31558280|gb|CD527492.1|CD527492
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|4967165|gb|AI691873.1|AI691873
EST:     TTTCCTGGT-ACTCGGAGTTGCAACAGTTGCTTCA-ATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|22935988|gb|BU572263.1|BU572263
EST:     TTTCCTGG-GACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
EST: gi|91873993|gb|EB403950.1|EB403950
EST:     TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGGTTGC-                         TGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC
genomic: TTTCCTGGTGACTCGGAGTTGCAACAGTTGCTTCACATCTTCAGG-TCCTtttctttcct ... aaaaggttgcTGGGAACACCTACTGAGGAACAGTGGCCTGGAGTGAGTGATTTAAGGGAC