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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacagtcttttcttttatattgtagtttttcgtctattaccttctattggcagtcaataccttttttgagttatgtttgcgtaatttatctttatcatgtttaag

Basic information

species Zea mays
transcript GRMZM2G484880_T05
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211058547|gb|FK994412.1|FK994412
EST:     CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA                         TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... catgtttaagTTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: gi|93284203|gb|EB676467.1|EB676467
EST:     CGGATGCAAAAGCTGATAAAGATGACACTAAAAGTCTCA                         TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCCTGGG
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... catgtttaagTTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGG
EST: gi|13178287|gb|BG349545.1|BG349545
EST:     CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA                         TTTCAGTGAAGGGGAAGAAACGTA
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... catgtttaagTTTCAGTGAAGGGGAAGAAACGTA
EST: gi|31997934|gb|CD661839.1|CD661839
EST:     CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA                         TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... catgtttaagTTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGAG
EST: gi|166482492|gb|EG041825.1|EG041825
EST:     CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA                         TTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGC
genomic: CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacag ... catgtttaagTTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAgtgagtacagtcttttcttttatattgtagtttttcgtctattaccttctattggcagtcaataccttttttgagttatgtttgcgtaatttatctttatcatgtttaag

- - - -  AAGCTG
- - - - - AGCTGA
- - - - -  GCTGAT
- - - - - - - - - AAGATG