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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAATGTTGTAATGCTGATAGGTTTTTGCGTTGAGGACAGAAGGCGTTTATTGGTTTACGAGTACATCTGCAATAGATCTTTGGATTCACATCTCTATGgtaagaccgttttctcggtaggatttatgtacataaaccattagtttggtcatggcacatgctgtcttcaagttcttgatgcacttaacaactttgtatt...

Basic information

species Zea mays
transcript GRMZM2G480607_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G480607_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g41870.1 (Oryza sativa), 5'ss of exon 5
CGAAATGTTGTAATGCTGATAGGTTTTTGCGTTGAGGACAGAAGGCGTTTATTGGTTTACGAGTACATCTGCAATAGATCTTTGGATTCACATCTCTATGgtaagaccgttttctcggtaggatttatgtacataaaccattagtttggtcatggcacatgctgtct-tcaagttcttgatgcacttaacaactt-tgtatt
|||||||||||||||||||| ||| |||| |||||||| || ||||||||  |||| || ||||||||||||||| |||| |||||||||||||| |||||||||| | ||||||   | | ||||||    | |||     | || | | ||    ||   ||||| | || ||  | || || || |||  ||   ||  
CGAAATGTTGTAATGCTGATTGGTCTTTGTGTTGAGGATAGGAGGCGTTTGCTGGTCTATGAGTACATCTGCAATGGATCCTTGGATTCACATCTTTATGgtaagatcattttctttcttgcatttatcagtaaaaaaaggcaattcg-tgataaatcac-ttgtctgtaaacttggtaatccagttgacagtttacctacg

upper sequence: GRMZM2G480607_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA15G02680.1 (Glycine max), 5'ss of exon 4
CGAAATGTTGTAATGCTGATAGGTTTTTGCGTTGAGGACAGAAGGCGTTTATTGGTTTACGAGTACATCTGCAATAGATCTTTGGATTCACATCTCTATGgtaagaccgttttctc---ggtaggatttatgtacataaaccattagtttggtcatggcacatgctgtcttcaagttcttgatgcacttaacaactttgtatt
||||||||||| ||| |||| || || ||  | ||||| | |||  |  ||||||||||||||||||| || || ||||| |||||||| ||| | ||||||||   | ||| ||    |      ||  |  |    |  |||   ||| |   ||||     ||  ||| |||   || |  ||   ||||   |||||  
CGAAATGTTGTTATGTTGATTGGGTTCTGTATAGAGGATAAAAGAAGGCTATTGGTTTACGAGTACATATGTAACAGATCATTGGATTCTCATTTATATGgtaatttcttttgctttcagaccaagttctttcatgacagtcatgttttttgaattggcttgaacttactt-aagccattca-acatgcaacattcttgtag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211499478|gb|FL286053.1|FL286053
EST:     TCTTTGGATTCACATCTCTATG                         GTCATAATCGAGAAACATTGGAGTGGACTGCACGACAAAAGATTGCAGTTG
genomic: TCTTTGGATTCACATCTCTATGgtaagaccgt ... tatcattcagGTCATAATCGAGAAACATTGGAGTGGACTGCACGACAAAAGATTGCAGTTG
EST: gi|32809375|gb|CD961609.1|CD961609
EST:     GATCTTTGGATTCACATCTCTATG                         GTCATAATCGAGAAACATTGGAGTGGACTGCACGACAAAAGATTGCAGTTG
genomic: GATCTTTGGATTCACATCTCTATGgtaagaccgt ... tatcattcagGTCATAATCGAGAAACATTGGAGTGGACTGCACGACAAAAGATTGCAGTTG
EST: gi|32827128|gb|CD966806.1|CD966806
EST:     GATCTTTGGATTCACATCTCTATG                         GTCATAATCGAGAAACATTGGAGTGGACTGCACGACAAAAGATTGCAGTTG
genomic: GATCTTTGGATTCACATCTCTATGgtaagaccgt ... tatcattcagGTCATAATCGAGAAACATTGGAGTGGACTGCACGACAAAAGATTGCAGTTG