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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTGCTTGCAGCTCTTGGATCAATTCAGTTTGTTTCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgtttctgactttctcgtagctggaataaaaatcagaattacatggaatcatgtgattaatgaagattttgctcctctttccag

Basic information

species Zea mays
transcript GRMZM2G477146_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 5
TCACTGCTTGCAGCTCTTGGATCAATTCAGTTTGTTTCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgtttctg---------actttctcgtagctggaataaaaatcagaatt-----acatggaatcatgtgattaatgaagattttgctcctctttccag
||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||| ||  ||||          | ||| |  ||   | ||| |    || | ||     || |||||| ||  |||| |||||| |||| |||  |||| |||
TCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAAgtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaattata-gatttatgaagtttttactctgcttttcag

upper sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT3G26670.3 (Arabidopsis thaliana), 5'ss of exon 5
TCACTGCTTGCAGCTCTTGGATCAATTCAGTTTGTTTCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgtttctgactttctcgtagctggaataaaaatcagaattacatggaatcatgtgattaatgaagattttgctcctcttt--ccag--
|| || || |||||||||||||| ||||| ||||| |||||||| || ||||| ||  |||| |||||||| |   || | || ||||||| |   | |   ||  ||   | ||  || |   || |    |  |   | ||       |  | |    |||  |   | ||   ||   
TCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAgtatgcaaactac---ctcgctgcaatctttaacatgcattaccgatttactaagtctctgctcttctaatatctttagtatgccttggtcacag

upper sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
TCACTGCTTGCAGCTCTTGGATCAATTCAGTTTGTTTCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgtttctga------ctt--tctcgtagctggaa------taaaaatcagaattacatggaatcatgtgattaa--tgaagattttgctcctctttccag
||||| |||||||| || ||||||||||| || |||||||||||||| ||||||||||| || |||||||| |   | || || ||||||||     |||||      |||  | ||  | ||   |      ||| | |  || || |||| |  |   | | |||  |  | || |||||  ||||| |||
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgct--tcttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78106037|gb|DV524455.1|DV524455
EST:     TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAA                         AGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC
genomic: TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgt ... ctctttccagAGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC
EST: gi|67033412|gb|CO462161.1|CO462161
EST:     TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAA                         AGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC
genomic: TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgt ... ctctttccagAGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC
EST: gi|76918522|gb|DV167332.1|DV167332
EST:     TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAA                         AGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC
genomic: TCCAACATTGCTTTTGCCTACTTTGTGTTGAACAAGACTATTTCAGTGAAgtatgtatgt ... ctctttccagAGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATC