Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCTGGCTTCCTGCTGTTTGGACCTCCTGGTTGCGGGAAAACACTAATAGCAAAAGCAGTGGCACATGAGGCAGGGGCTAACTTTATTCACATCAAGgtggttgatgttgagattttcacattttttacatcagtttttcaaagccacacaaagtagttctaagattttctatttctggttcattag

Basic information

species Zea mays
transcript GRMZM2G475360_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G475360_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g01980.1 (Oryza sativa), 5'ss of exon 4
GCAAGCTGGCTTCCTGCTGTTTGGACCTCCTGGTTGCGGGAAAACACTAATAGCAAAAGCAGTGGCACATGAGGCAGGGGCTAACTTTATTCACATCAAGgtggttgatgttgagattttcacattttttacatcagtttttcaaagccacacaaagtagttctaagattttctatttctggttcattag
||||||||||||  ||||||||||||| || ||||| ||||||||||| |||||||||||||| || |||||||||||||| || |||||||| || ||||| ||||||| | | ||||    |||||   || |  |  |||| |   | ||||||||    |||||| |||  ||    ||| |    
GCAAGCTGGCTTTTTGCTGTTTGGACCACCCGGTTGTGGGAAAACACTGATAGCAAAAGCAGTTGCGCATGAGGCAGGGGCAAATTTTATTCATATTAAGgtagttgatgcttatatttctgtattttgacca-cgttcgttcagatttatacaaagtaacgttaagatattcctttgtgtgtttag---

upper sequence: GRMZM2G475360_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G19920.1 (Glycine max), 5'ss of exon 4
GCAAGCTGGCTTCCTGCTGTTTGGACCTCCTGGTTGCGGGAAAACACTAATAGCAAAAGCAGTGGCACATGAGGCAGGGGCTAACTTTATTCACATCAAGgtggttgatgt----tgagattttcacattttttacatcagtttttcaaagccacacaaagtagttctaag------attttctatttctggttcattag
  |  | || ||  |||| | |||||||||||| || || |||||||| || || ||||| || ||  |||||||||||||||  |||||||| || |||||   | || |         ||||| ||||  ||     | || |          | |||  | || |||       | || || ||  ||| |  ||||
CGAGACGGGATTTTTGCTTTATGGACCTCCTGGGTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTTTTATTCATATTAAGgtcagtcatttactccacccttttctcattagttttggta-ttgtcttgttttgaataaatcatttttaaatgattaaattgcttttgttggatttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352170|gb|DN219143.1|DN219143
EST:     TAGCAAAAGCAGTGGCACATGAGGCAGGGGCTAACTTTATTCACATCAAG                         GGTCCTGAGCTATTGAACAAGTATGTTGGGGAGAGTGAATCGGAAGTTAGG
genomic: TAGCAAAAGCAGTGGCACATGAGGCAGGGGCTAACTTTATTCACATCAAGgtggttgatg ... ggttcattagGGGCCTGAGCTATTGAACAAGTATGTTGGGGAGAGTGAATCGGAAGTTAGG
EST: gi|87157739|gb|DY402528.1|DY402528
EST:     TAGCAAAAGCAGTGGCACATGAGGCAGGGGCTAACTTTATTCACATCAAG                         GGGCCTGAGCTATTGAACAAGTATGTTGGGGAGAGTGAATCGGAAGTTAGG
genomic: TAGCAAAAGCAGTGGCACATGAGGCAGGGGCTAACTTTATTCACATCAAGgtggttgatg ... ggttcattagGGGCCTGAGCTATTGAACAAGTATGTTGGGGAGAGTGAATCGGAAGTTAGG