ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

CTGTAAATATGGAGCAGCCTGCAAATATCATCATCCTCAATACTTCAGTGGACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagatctcatgcatgttttcattcaagaagcttctttgttgtctacatgaaaaatgaaatatgatccatattggtttgcatccttcgattaccgg...

Basic information

species	Zea mays
transcript	GRMZM2G475017_T03
intron #	5
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G475017_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g15350.1 (Oryza sativa), 5'ss of exon 6

CTGTAAATATGGAGCAGCCTGCAAATATCATCATCCTCAATACTTCAGTGGACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagatctcatgcatgttttcattcaagaagcttctttgttgtcta-catgaaaaatgaaatatgatccatattggtttgcatccttcgattaccgg
 ||||||| |||| | || |||||||||||||||||||| || || | |  ||| |||||||||||||| ||||| ||||| |||||||| || || || |||||||| ||  |  ||| | | | || |  | ||||      ||| || || |        |  ||  ||  |     | |  |||  | || |   | 
TTGTAAATTTGGATCTGCATGCAAATATCATCATCCTCAGTATTTGAATACACCTAAGTCTAACTGTATGCTGAGTCCTCTTGGTCTTCCTCTTCGGCCGgtgagtagctccaacacatatctgcttttat-atgcttaaactatgtgtagcacgctgttgccaggatagtcagtccaaatgtatatcgcttgagtctgga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|78124247|gb|DV542631.1|DV542631

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGCCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|78124246|gb|DV542630.1|DV542630

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|38688408|gb|CK145439.1|CK145439

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|84969557|gb|DW467991.1|DW467991

EST:     GACCAAAGTCTAACTGTATACGGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTGGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|78113753|gb|DV532142.1|DV532142

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|93016430|gb|EB641950.1|EB641950

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|37425826|gb|CF650662.1|CF650662

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|149001215|gb|EE038486.2|EE038486

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|93013775|gb|EB639295.1|EB639295

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|37423925|gb|CF649692.1|CF649692

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|74243938|gb|DT651852.1|DT651852

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|71308180|gb|DR790323.1|DR790323

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|94480243|gb|EB709201.1|EB709201

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|148943244|gb|EC888305.2|EC888305

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|89248990|gb|DY620776.1|DY620776

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

EST: gi|148956403|gb|EC902221.2|EC902221

EST:     GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCT                         GGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG
genomic: GACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 81

CTGTAAATATGGAGCAGCCTGCAAATATCATCATCCTCAATACTTCAGTGGACCAAAGTCTAACTGTATACTGAGCCCTCTGGGTCTTCCCCTGCGTCCTgtgagtagat ... tggtgtgcagGGTTCTCAGCGATGTGCTTACTACGCACACCATGGCTTTTGCAAGTTTGGGCCGACATGCAAGTTTGATCACCCGATGGGTACTCCAAACTACAGTCTTC

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 75

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 62