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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtcatgtggacaaggtttcgttctttctttgatttggtaactagttctgagttggtctgatccttctttgatatacag

Basic information

species Zea mays
transcript GRMZM2G472625_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G472625_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 5
CTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtcatgtggacaaggtttcgttctttctttgatttggtaactagttctgagttggtctgatccttctttgatatacag
|||||||||||  |||| |||||||||| ||| |||||||||||||| |||||||| || |||||||| ||||||||| |  | ||||| |||||| | | ||  |||| |   |||||   | ||| |||  ||||||     | |||    ||||||
CTTTTCAGAGGGTTAGCTTATATTCATACTGTTCCAGGAGTCTGCCACAGGGATGTGAAACCACAAAATGTTTTGgtatgacttatgtgaacaaggctacattacttctcttgcttggttgtttgttttgaactggtctctaattgcttgctgatacag

upper sequence: GRMZM2G472625_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 5
CTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtcatgtggacaaggtttcgttctttctttgatt--tggtaactagttctgagttggtctgatccttctttgatatacag
 | || || || || || ||||| |||| |||||||||| |||||||||||||| | ||||| |||||  |||||||| ||         |  || || |  | ||||||  |    | | |  || || |   |    ||  |     |||| | |  ||
ATCTTTAGGGGACTGGCGTATATCCATACTGTACCAGGAATCTGCCATAGGGATTTGAAGCCTCAAAATCTTTTGgtaagt--------tattagtttgctatttttcttcaaggaatagcatttatttattc-taaacctattttccatttgttctgtag

upper sequence: GRMZM2G472625_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G42840.1 (Glycine max), 5'ss of exon 5
CTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtcatgtggacaaggtttcgttctttctttgatttggtaactagttctgagttggtctgatccttctttgatatacag
 | ||||| ||  |||| ||||| ||||  |  |   |||| |||||||||||||||||||| |||||  ||||||||||| |  | |  |         ||| || ||  | | |  | | |  |||| |      ||  | | | | |||  |||||
ATCTTCAGGGGATTAGCATATATCCATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttctttcaa--------tgtttttcctgagttgtattcatttattctaaac----cttttgcatatatgac-tacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33095534|gb|CF055528.1|CF055528
EST:     ATAATGTGCCAGGAGTCTGCCATAGGGATGTAAAGTCACAAAACGTTTTG                         GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: gi|6695759|gb|AW288837.1|AW288837
EST:     ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG                         GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: gi|13198123|gb|BG354164.1|BG354164
EST:     ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG                         GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: gi|20811237|gb|BQ295715.1|BQ295715
EST:     ATAATGTACCCGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG                         GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAA
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAA
EST: gi|6587591|gb|AW244909.1|AW244909
EST:     CCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG                         GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
genomic: CCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: gi|211467509|gb|FL214418.1|FL214418
EST:     TGTAAAGCCACAAAACGTTTTG                         GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
genomic: TGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: gi|6696036|gb|AW289144.1|AW289144
EST:     ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG                         GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
EST: gi|9825069|gb|BE575271.1|BE575271
EST:     ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG                         GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA
genomic: ATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTGgtacgtgtca ... tgatatacagGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAA