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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGTCTTCTCCTTCGGTGTGATGCTGCTGGAGCTCATCACCGGGAGGAAACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtccttctttggacccaatccttcttgcctaaattagttcccatccatcagttaactatgactgtgctaagtatcggtactggttggttataagctgttacatactttacataatag

Basic information

species Zea mays
transcript GRMZM2G470499_T05
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470499_T05 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g54700.1 (Oryza sativa), 5'ss of exon 6
CGACGTCTTCTCCTTCGGTGTGATGCTGCTGGAGCTCATCACCGGGAGGAAACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtccttctttggacccaatccttcttgcctaaattagttcccatccatcagttaactatgactgtgctaagtatcggtactggttggttataagctgttacatactttacataatag
|||||||||||| ||||| |||||||| |||||||| |||||||||| ||| || |||||||  |||   |     ||| |||   |||||||||||||||||||||| | | |    | |   | ||     |   |  |   || ||||    ||     |  |||  ||  | | | || ||    ||     |                           
CGACGTCTTCTCATTCGGCGTGATGCTCCTGGAGCTGATCACCGGGAAGAAGCCTATCATGGTGTCTCACGGTGACCAGCCTGACACATTGGTTTCTTGGgtgagtgggcttccg--agtcttgaacc-----gaacacgtagatttccatttgcca-cggccggtgaaagtagtca-tctctgtgtgtgtccaacag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78090030|gb|DV518404.1|DV518404
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         CATCACGTGGATTCCCCATTCGATATGCAACAGCGACAGTTCCTCTGCTCC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tacataatagCATCACGTGGATTCCCCATTCGATATGCAACAGCGACAGTTCCTCTGCTCC